Merge version number bump and NEWS file from master

daviesrob · daviesrob · commit d4c747b70d63 · 2025-12-16T09:27:41.000Z
diff --git a/Makefile b/Makefile
@@ -158,8 +158,8 @@ LIBHTS_SOVERSION = 3
 # is not strictly necessary and should be removed the next time
 # LIBHTS_SOVERSION is bumped (see #1144 and
 # https://developer.apple.com/library/archive/documentation/DeveloperTools/Conceptual/DynamicLibraries/100-Articles/DynamicLibraryDesignGuidelines.html#//apple_ref/doc/uid/TP40002013-SW23)
-MACH_O_COMPATIBILITY_VERSION = 3.1.22
-MACH_O_CURRENT_VERSION = 3.1.22
+MACH_O_COMPATIBILITY_VERSION = 3.1.23
+MACH_O_CURRENT_VERSION = 3.1.23
 
 # Force version.h to be remade if $(PACKAGE_VERSION) has changed.
 version.h: $(if $(wildcard version.h),$(if $(findstring "$(PACKAGE_VERSION)",$(shell cat version.h)),,force))
diff --git a/NEWS b/NEWS
@@ -1,6 +1,9 @@
 Noteworthy changes in release a.b
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 
+Noteworthy changes in release 1.23 (16th December 2025)
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+
 Updates
 -------
 
diff --git a/annot-tsv.1 b/annot-tsv.1
@@ -1,5 +1,5 @@
 '\" t
-.TH annot-tsv 1 "14 July 2025" "htslib-1.22.1" "Bioinformatics tools"
+.TH annot-tsv 1 "16 December 2025" "htslib-1.23" "Bioinformatics tools"
 .\"
 .\" Copyright (C) 2015, 2017-2018, 2023-2024 Genome Research Ltd.
 .\"
diff --git a/bgzip.1 b/bgzip.1
@@ -1,4 +1,4 @@
-.TH bgzip 1 "14 July 2025" "htslib-1.22.1" "Bioinformatics tools"
+.TH bgzip 1 "16 December 2025" "htslib-1.23" "Bioinformatics tools"
 .SH NAME
 .PP
 bgzip \- Block compression/decompression utility
diff --git a/htsfile.1 b/htsfile.1
@@ -1,4 +1,4 @@
-.TH htsfile 1 "14 July 2025" "htslib-1.22.1" "Bioinformatics tools"
+.TH htsfile 1 "16 December 2025" "htslib-1.23" "Bioinformatics tools"
 .SH NAME
 htsfile \- identify high-throughput sequencing data files
 .\"
diff --git a/htslib-s3-plugin.7 b/htslib-s3-plugin.7
@@ -1,4 +1,4 @@
-.TH htslib-s3-plugin 7 "14 July 2025" "htslib-1.22.1" "Bioinformatics tools"
+.TH htslib-s3-plugin 7 "16 December 2025" "htslib-1.23" "Bioinformatics tools"
 .SH NAME
 htslib-s3-plugin \- htslib AWS S3 plugin
 .\"
diff --git a/htslib.map b/htslib.map
@@ -650,3 +650,15 @@ HTSLIB_1.21 {
     cram_num_containers;
     cram_num_containers_between;
 } HTSLIB_1.20;
+
+HTSLIB_1.22 {
+    bcf_format_gt_v2;
+    bcf_sr_add_hreader;
+    hts_crc32;
+    hts_tpool_worker_id;
+} HTSLIB_1.21;
+
+HTSLIB_1.23 {
+    sam_hdr_get;
+    sam_hdr_set;
+} HTSLIB_1.22;
diff --git a/htslib/hts.h b/htslib/hts.h
@@ -500,7 +500,7 @@ const char *hts_version(void);
 // Immediately after release, bump ZZ to 90 to distinguish in-development
 // Git repository builds from the release; you may wish to increment this
 // further when significant features are merged.
-#define HTS_VERSION 102290
+#define HTS_VERSION 102390
 
 /*! @abstract Introspection on the features enabled in htslib
  *
diff --git a/ref_cache/ref-cache.1 b/ref_cache/ref-cache.1
@@ -1,4 +1,4 @@
-.TH ref-cache 1 "14 July 2025" "htslib-1.22.1" "Bioinformatics tools"
+.TH ref-cache 1 "16 December 2025" "htslib-1.23" "Bioinformatics tools"
 .SH NAME
 ref-cache \- CRAM reference caching proxy
 .\"
diff --git a/tabix.1 b/tabix.1
@@ -1,4 +1,4 @@
-.TH tabix 1 "14 July 2025" "htslib-1.22.1" "Bioinformatics tools"
+.TH tabix 1 "16 December 2025" "htslib-1.23" "Bioinformatics tools"
 .SH NAME
 .PP
 tabix \- Generic indexer for TAB-delimited genome position files
diff --git a/version.sh b/version.sh
@@ -24,7 +24,7 @@
 # DEALINGS IN THE SOFTWARE.
 
 # Master version, for use in tarballs or non-git source copies
-VERSION=1.22.1
+VERSION=1.23
 
 # If we have a git clone, then check against the current tag
 srcdir=${0%/version.sh}

Original file line number	Diff line number	Diff line change
`@@ -1,4 +1,4 @@`
`1`		`-.TH bgzip 1 "14 July 2025" "htslib-1.22.1" "Bioinformatics tools"`
	`1`	`+.TH bgzip 1 "16 December 2025" "htslib-1.23" "Bioinformatics tools"`
`2`	`2`	`.SH NAME`
`3`	`3`	`.PP`
`4`	`4`	`bgzip \- Block compression/decompression utility`
Original file line number	Diff line number	Diff line change
`@@ -1,4 +1,4 @@`
`1`		`-.TH htsfile 1 "14 July 2025" "htslib-1.22.1" "Bioinformatics tools"`
	`1`	`+.TH htsfile 1 "16 December 2025" "htslib-1.23" "Bioinformatics tools"`
`2`	`2`	`.SH NAME`
`3`	`3`	`htsfile \- identify high-throughput sequencing data files`
`4`	`4`	`.\"`
Original file line number	Diff line number	Diff line change
`@@ -1,4 +1,4 @@`
`1`		`-.TH htslib-s3-plugin 7 "14 July 2025" "htslib-1.22.1" "Bioinformatics tools"`
	`1`	`+.TH htslib-s3-plugin 7 "16 December 2025" "htslib-1.23" "Bioinformatics tools"`
`2`	`2`	`.SH NAME`
`3`	`3`	`htslib-s3-plugin \- htslib AWS S3 plugin`
`4`	`4`	`.\"`
Original file line number	Diff line number	Diff line change
`@@ -500,7 +500,7 @@ const char *hts_version(void);`
`500`	`500`	`// Immediately after release, bump ZZ to 90 to distinguish in-development`
`501`	`501`	`// Git repository builds from the release; you may wish to increment this`
`502`	`502`	`// further when significant features are merged.`
`503`		`-#define HTS_VERSION 102290`
	`503`	`+#define HTS_VERSION 102390`
`504`	`504`
`505`	`505`	`/*! @abstract Introspection on the features enabled in htslib`
`506`	`506`	`*`
Original file line number	Diff line number	Diff line change
`@@ -1,4 +1,4 @@`
`1`		`-.TH ref-cache 1 "14 July 2025" "htslib-1.22.1" "Bioinformatics tools"`
	`1`	`+.TH ref-cache 1 "16 December 2025" "htslib-1.23" "Bioinformatics tools"`
`2`	`2`	`.SH NAME`
`3`	`3`	`ref-cache \- CRAM reference caching proxy`
`4`	`4`	`.\"`
Original file line number	Diff line number	Diff line change
`@@ -1,4 +1,4 @@`
`1`		`-.TH tabix 1 "14 July 2025" "htslib-1.22.1" "Bioinformatics tools"`
	`1`	`+.TH tabix 1 "16 December 2025" "htslib-1.23" "Bioinformatics tools"`
`2`	`2`	`.SH NAME`
`3`	`3`	`.PP`
`4`	`4`	`tabix \- Generic indexer for TAB-delimited genome position files`