bowtie2 tutorial error

[IceGreb]

Greetings and thank you for this amazingly helpful tool!

While running the bowtie2 tutorial and in the bcftools variant calling section i encountered the following :

*i also tried to give the direct path of the .fasta

[robertaboukhalil]

Thanks @IceGreb!

That's strange, your REF and REF_FASTA look a little different than they should, yours are missing the /shared/ prefix 🤔

Can you try running the following:

REF=/shared/bowtie2/example/index/lambda_virus
REF_FASTA=/shared/bowtie2/example/reference/lambda_virus.fa

And retrying?

[IceGreb]

It worked! 😃 Thanks!