Fix pixi depreciation

sanders41 · sanders41 · commit f9557bd4f8ca · 2025-12-12T20:57:32.000-05:00
diff --git a/src/project_generator.rs b/src/project_generator.rs
@@ -536,7 +536,7 @@ requires-python = ">={min_python_version}"
 dynamic = ["version"]
 dependencies = []
 
-[tool.pixi.project]
+[tool.pixi.workspace]
 channels = ["conda-forge", "bioconda"]
 platforms = ["linux-64", "osx-arm64", "osx-64", "win-64"]
 
diff --git a/src/snapshots/python_project__project_generator__tests__create_pixi_pyproject_toml_mit_lib.snap b/src/snapshots/python_project__project_generator__tests__create_pixi_pyproject_toml_mit_lib.snap
@@ -2,4 +2,4 @@
 source: src/project_generator.rs
 expression: content
 ---
-"[build-system]\nrequires = [\"hatchling\"]\nbuild-backend = \"hatchling.build\"\n\n[project]\nname = \"my-project\"\ndescription = \"This is a test\"\nauthors = [\n  { name = \"Arthur Dent\", email = \"authur@heartofgold.com\" }\n]\nlicense = { file = \"LICENSE\" }\nreadme = \"README.md\"\nrequires-python = \">=3.10\"\ndynamic = [\"version\"]\ndependencies = []\n\n[tool.pixi.project]\nchannels = [\"conda-forge\", \"bioconda\"]\nplatforms = [\"linux-64\", \"osx-arm64\", \"osx-64\", \"win-64\"]\n\n[tool.pixi.feature.dev.tasks]\nrun-mypy = \"mypy my_project tests\"\nrun-ruff-check = \"ruff check my_project tests\"\nrun-ruff-format = \"ruff format my_project tests\"\nrun-pytest = \"pytest -x\"\n\n[project.optional-dependencies]\ndev = []\n\n[tool.pixi.environments]\ndefault = {features = [], solve-group = \"default\"}\ndev = {features = [\"dev\"], solve-group = \"default\"}\n\n[tool.hatch.version]\npath = \"my_project/_version.py\"\n\n[tool.mypy]\ncheck_untyped_defs = true\ndisallow_untyped_defs = true\n\n[[tool.mypy.overrides]]\nmodule = [\"tests.*\"]\ndisallow_untyped_defs = false\n\n[tool.pytest.ini_options]\nminversion = \"6.0\"\naddopts = \"--cov=my_project --cov-report term-missing --no-cov-on-fail\"\n\n[tool.coverage.report]\nexclude_lines = [\"if __name__ == .__main__.:\", \"pragma: no cover\"]\n\n[tool.ruff]\nline-length = 100\ntarget-version = \"py310\"\nfix = true\n\n[tool.ruff.lint]\nselect = [\n  \"E\",  # pycodestyle\n  \"B\",  # flake8-bugbear\n  \"W\",  # Warning\n  \"F\",  # pyflakes\n  \"UP\",  # pyupgrade\n  \"I001\",  # unsorted-imports\n  \"T201\",  # print found\n  \"T203\",  # pprint found\n  \"RUF022\",  # Unsorted __all__\n  \"RUF023\",  # Unforted __slots__\n]\nignore=[\n  # Recommended ignores by ruff when using formatter\n  \"E501\",\n  \"W191\",\n  \"E111\",\n  \"E114\",\n  \"E117\",\n  \"D206\",\n  \"D300\",\n  \"Q000\",\n  \"Q001\",\n  \"Q002\",\n  \"Q003\",\n  \"COM812\",\n  \"COM819\",\n  \"ISC001\",\n  \"ISC002\",\n]\n"
+"[build-system]\nrequires = [\"hatchling\"]\nbuild-backend = \"hatchling.build\"\n\n[project]\nname = \"my-project\"\ndescription = \"This is a test\"\nauthors = [\n  { name = \"Arthur Dent\", email = \"authur@heartofgold.com\" }\n]\nlicense = { file = \"LICENSE\" }\nreadme = \"README.md\"\nrequires-python = \">=3.10\"\ndynamic = [\"version\"]\ndependencies = []\n\n[tool.pixi.workspace]\nchannels = [\"conda-forge\", \"bioconda\"]\nplatforms = [\"linux-64\", \"osx-arm64\", \"osx-64\", \"win-64\"]\n\n[tool.pixi.feature.dev.tasks]\nrun-mypy = \"mypy my_project tests\"\nrun-ruff-check = \"ruff check my_project tests\"\nrun-ruff-format = \"ruff format my_project tests\"\nrun-pytest = \"pytest -x\"\n\n[project.optional-dependencies]\ndev = []\n\n[tool.pixi.environments]\ndefault = {features = [], solve-group = \"default\"}\ndev = {features = [\"dev\"], solve-group = \"default\"}\n\n[tool.hatch.version]\npath = \"my_project/_version.py\"\n\n[tool.mypy]\ncheck_untyped_defs = true\ndisallow_untyped_defs = true\n\n[[tool.mypy.overrides]]\nmodule = [\"tests.*\"]\ndisallow_untyped_defs = false\n\n[tool.pytest.ini_options]\nminversion = \"6.0\"\naddopts = \"--cov=my_project --cov-report term-missing --no-cov-on-fail\"\n\n[tool.coverage.report]\nexclude_lines = [\"if __name__ == .__main__.:\", \"pragma: no cover\"]\n\n[tool.ruff]\nline-length = 100\ntarget-version = \"py310\"\nfix = true\n\n[tool.ruff.lint]\nselect = [\n  \"E\",  # pycodestyle\n  \"B\",  # flake8-bugbear\n  \"W\",  # Warning\n  \"F\",  # pyflakes\n  \"UP\",  # pyupgrade\n  \"I001\",  # unsorted-imports\n  \"T201\",  # print found\n  \"T203\",  # pprint found\n  \"RUF022\",  # Unsorted __all__\n  \"RUF023\",  # Unforted __slots__\n]\nignore=[\n  # Recommended ignores by ruff when using formatter\n  \"E501\",\n  \"W191\",\n  \"E111\",\n  \"E114\",\n  \"E117\",\n  \"D206\",\n  \"D300\",\n  \"Q000\",\n  \"Q001\",\n  \"Q002\",\n  \"Q003\",\n  \"COM812\",\n  \"COM819\",\n  \"ISC001\",\n  \"ISC002\",\n]\n"
diff --git a/src/snapshots/python_project__project_generator__tests__save_pixi_pyproject_toml_file_apache_application.snap b/src/snapshots/python_project__project_generator__tests__save_pixi_pyproject_toml_file_apache_application.snap
@@ -2,4 +2,4 @@
 source: src/project_generator.rs
 expression: content
 ---
-"[build-system]\nrequires = [\"hatchling\"]\nbuild-backend = \"hatchling.build\"\n\n[project]\nname = \"my-project\"\ndescription = \"This is a test\"\nauthors = [\n  { name = \"Arthur Dent\", email = \"authur@heartofgold.com\" }\n]\nlicense = { file = \"LICENSE\" }\nreadme = \"README.md\"\nrequires-python = \">=3.10\"\ndynamic = [\"version\"]\ndependencies = []\n\n[tool.pixi.project]\nchannels = [\"conda-forge\", \"bioconda\"]\nplatforms = [\"linux-64\", \"osx-arm64\", \"osx-64\", \"win-64\"]\n\n[tool.pixi.feature.dev.tasks]\nrun-mypy = \"mypy my_project tests\"\nrun-ruff-check = \"ruff check my_project tests\"\nrun-ruff-format = \"ruff format my_project tests\"\nrun-pytest = \"pytest -x\"\n\n[project.optional-dependencies]\ndev = []\n\n[tool.pixi.environments]\ndefault = {features = [], solve-group = \"default\"}\ndev = {features = [\"dev\"], solve-group = \"default\"}\n\n[tool.hatch.version]\npath = \"my_project/_version.py\"\n\n[tool.mypy]\ncheck_untyped_defs = true\ndisallow_untyped_defs = true\n\n[[tool.mypy.overrides]]\nmodule = [\"tests.*\"]\ndisallow_untyped_defs = false\n\n[tool.pytest.ini_options]\nminversion = \"6.0\"\naddopts = \"--cov=my_project --cov-report term-missing --no-cov-on-fail\"\n\n[tool.coverage.report]\nexclude_lines = [\"if __name__ == .__main__.:\", \"pragma: no cover\"]\n\n[tool.ruff]\nline-length = 100\ntarget-version = \"py310\"\nfix = true\n\n[tool.ruff.lint]\nselect = [\n  \"E\",  # pycodestyle\n  \"B\",  # flake8-bugbear\n  \"W\",  # Warning\n  \"F\",  # pyflakes\n  \"UP\",  # pyupgrade\n  \"I001\",  # unsorted-imports\n  \"T201\",  # print found\n  \"T203\",  # pprint found\n  \"RUF022\",  # Unsorted __all__\n  \"RUF023\",  # Unforted __slots__\n]\nignore=[\n  # Recommended ignores by ruff when using formatter\n  \"E501\",\n  \"W191\",\n  \"E111\",\n  \"E114\",\n  \"E117\",\n  \"D206\",\n  \"D300\",\n  \"Q000\",\n  \"Q001\",\n  \"Q002\",\n  \"Q003\",\n  \"COM812\",\n  \"COM819\",\n  \"ISC001\",\n  \"ISC002\",\n]\n"
+"[build-system]\nrequires = [\"hatchling\"]\nbuild-backend = \"hatchling.build\"\n\n[project]\nname = \"my-project\"\ndescription = \"This is a test\"\nauthors = [\n  { name = \"Arthur Dent\", email = \"authur@heartofgold.com\" }\n]\nlicense = { file = \"LICENSE\" }\nreadme = \"README.md\"\nrequires-python = \">=3.10\"\ndynamic = [\"version\"]\ndependencies = []\n\n[tool.pixi.workspace]\nchannels = [\"conda-forge\", \"bioconda\"]\nplatforms = [\"linux-64\", \"osx-arm64\", \"osx-64\", \"win-64\"]\n\n[tool.pixi.feature.dev.tasks]\nrun-mypy = \"mypy my_project tests\"\nrun-ruff-check = \"ruff check my_project tests\"\nrun-ruff-format = \"ruff format my_project tests\"\nrun-pytest = \"pytest -x\"\n\n[project.optional-dependencies]\ndev = []\n\n[tool.pixi.environments]\ndefault = {features = [], solve-group = \"default\"}\ndev = {features = [\"dev\"], solve-group = \"default\"}\n\n[tool.hatch.version]\npath = \"my_project/_version.py\"\n\n[tool.mypy]\ncheck_untyped_defs = true\ndisallow_untyped_defs = true\n\n[[tool.mypy.overrides]]\nmodule = [\"tests.*\"]\ndisallow_untyped_defs = false\n\n[tool.pytest.ini_options]\nminversion = \"6.0\"\naddopts = \"--cov=my_project --cov-report term-missing --no-cov-on-fail\"\n\n[tool.coverage.report]\nexclude_lines = [\"if __name__ == .__main__.:\", \"pragma: no cover\"]\n\n[tool.ruff]\nline-length = 100\ntarget-version = \"py310\"\nfix = true\n\n[tool.ruff.lint]\nselect = [\n  \"E\",  # pycodestyle\n  \"B\",  # flake8-bugbear\n  \"W\",  # Warning\n  \"F\",  # pyflakes\n  \"UP\",  # pyupgrade\n  \"I001\",  # unsorted-imports\n  \"T201\",  # print found\n  \"T203\",  # pprint found\n  \"RUF022\",  # Unsorted __all__\n  \"RUF023\",  # Unforted __slots__\n]\nignore=[\n  # Recommended ignores by ruff when using formatter\n  \"E501\",\n  \"W191\",\n  \"E111\",\n  \"E114\",\n  \"E117\",\n  \"D206\",\n  \"D300\",\n  \"Q000\",\n  \"Q001\",\n  \"Q002\",\n  \"Q003\",\n  \"COM812\",\n  \"COM819\",\n  \"ISC001\",\n  \"ISC002\",\n]\n"
diff --git a/src/snapshots/python_project__project_generator__tests__save_pixi_pyproject_toml_file_mit_application.snap b/src/snapshots/python_project__project_generator__tests__save_pixi_pyproject_toml_file_mit_application.snap
@@ -2,4 +2,4 @@
 source: src/project_generator.rs
 expression: content
 ---
-"[build-system]\nrequires = [\"hatchling\"]\nbuild-backend = \"hatchling.build\"\n\n[project]\nname = \"my-project\"\ndescription = \"This is a test\"\nauthors = [\n  { name = \"Arthur Dent\", email = \"authur@heartofgold.com\" }\n]\nlicense = { file = \"LICENSE\" }\nreadme = \"README.md\"\nrequires-python = \">=3.10\"\ndynamic = [\"version\"]\ndependencies = []\n\n[tool.pixi.project]\nchannels = [\"conda-forge\", \"bioconda\"]\nplatforms = [\"linux-64\", \"osx-arm64\", \"osx-64\", \"win-64\"]\n\n[tool.pixi.feature.dev.tasks]\nrun-mypy = \"mypy my_project tests\"\nrun-ruff-check = \"ruff check my_project tests\"\nrun-ruff-format = \"ruff format my_project tests\"\nrun-pytest = \"pytest -x\"\n\n[project.optional-dependencies]\ndev = []\n\n[tool.pixi.environments]\ndefault = {features = [], solve-group = \"default\"}\ndev = {features = [\"dev\"], solve-group = \"default\"}\n\n[tool.hatch.version]\npath = \"my_project/_version.py\"\n\n[tool.mypy]\ncheck_untyped_defs = true\ndisallow_untyped_defs = true\n\n[[tool.mypy.overrides]]\nmodule = [\"tests.*\"]\ndisallow_untyped_defs = false\n\n[tool.pytest.ini_options]\nminversion = \"6.0\"\naddopts = \"--cov=my_project --cov-report term-missing --no-cov-on-fail\"\n\n[tool.coverage.report]\nexclude_lines = [\"if __name__ == .__main__.:\", \"pragma: no cover\"]\n\n[tool.ruff]\nline-length = 100\ntarget-version = \"py310\"\nfix = true\n\n[tool.ruff.lint]\nselect = [\n  \"E\",  # pycodestyle\n  \"B\",  # flake8-bugbear\n  \"W\",  # Warning\n  \"F\",  # pyflakes\n  \"UP\",  # pyupgrade\n  \"I001\",  # unsorted-imports\n  \"T201\",  # print found\n  \"T203\",  # pprint found\n  \"RUF022\",  # Unsorted __all__\n  \"RUF023\",  # Unforted __slots__\n]\nignore=[\n  # Recommended ignores by ruff when using formatter\n  \"E501\",\n  \"W191\",\n  \"E111\",\n  \"E114\",\n  \"E117\",\n  \"D206\",\n  \"D300\",\n  \"Q000\",\n  \"Q001\",\n  \"Q002\",\n  \"Q003\",\n  \"COM812\",\n  \"COM819\",\n  \"ISC001\",\n  \"ISC002\",\n]\n"
+"[build-system]\nrequires = [\"hatchling\"]\nbuild-backend = \"hatchling.build\"\n\n[project]\nname = \"my-project\"\ndescription = \"This is a test\"\nauthors = [\n  { name = \"Arthur Dent\", email = \"authur@heartofgold.com\" }\n]\nlicense = { file = \"LICENSE\" }\nreadme = \"README.md\"\nrequires-python = \">=3.10\"\ndynamic = [\"version\"]\ndependencies = []\n\n[tool.pixi.workspace]\nchannels = [\"conda-forge\", \"bioconda\"]\nplatforms = [\"linux-64\", \"osx-arm64\", \"osx-64\", \"win-64\"]\n\n[tool.pixi.feature.dev.tasks]\nrun-mypy = \"mypy my_project tests\"\nrun-ruff-check = \"ruff check my_project tests\"\nrun-ruff-format = \"ruff format my_project tests\"\nrun-pytest = \"pytest -x\"\n\n[project.optional-dependencies]\ndev = []\n\n[tool.pixi.environments]\ndefault = {features = [], solve-group = \"default\"}\ndev = {features = [\"dev\"], solve-group = \"default\"}\n\n[tool.hatch.version]\npath = \"my_project/_version.py\"\n\n[tool.mypy]\ncheck_untyped_defs = true\ndisallow_untyped_defs = true\n\n[[tool.mypy.overrides]]\nmodule = [\"tests.*\"]\ndisallow_untyped_defs = false\n\n[tool.pytest.ini_options]\nminversion = \"6.0\"\naddopts = \"--cov=my_project --cov-report term-missing --no-cov-on-fail\"\n\n[tool.coverage.report]\nexclude_lines = [\"if __name__ == .__main__.:\", \"pragma: no cover\"]\n\n[tool.ruff]\nline-length = 100\ntarget-version = \"py310\"\nfix = true\n\n[tool.ruff.lint]\nselect = [\n  \"E\",  # pycodestyle\n  \"B\",  # flake8-bugbear\n  \"W\",  # Warning\n  \"F\",  # pyflakes\n  \"UP\",  # pyupgrade\n  \"I001\",  # unsorted-imports\n  \"T201\",  # print found\n  \"T203\",  # pprint found\n  \"RUF022\",  # Unsorted __all__\n  \"RUF023\",  # Unforted __slots__\n]\nignore=[\n  # Recommended ignores by ruff when using formatter\n  \"E501\",\n  \"W191\",\n  \"E111\",\n  \"E114\",\n  \"E117\",\n  \"D206\",\n  \"D300\",\n  \"Q000\",\n  \"Q001\",\n  \"Q002\",\n  \"Q003\",\n  \"COM812\",\n  \"COM819\",\n  \"ISC001\",\n  \"ISC002\",\n]\n"
diff --git a/src/snapshots/python_project__project_generator__tests__save_pixi_pyproject_toml_file_no_license_application.snap b/src/snapshots/python_project__project_generator__tests__save_pixi_pyproject_toml_file_no_license_application.snap
@@ -2,4 +2,4 @@
 source: src/project_generator.rs
 expression: content
 ---
-"[build-system]\nrequires = [\"hatchling\"]\nbuild-backend = \"hatchling.build\"\n\n[project]\nname = \"my-project\"\ndescription = \"This is a test\"\nauthors = [\n  { name = \"Arthur Dent\", email = \"authur@heartofgold.com\" }\n]\nreadme = \"README.md\"\nrequires-python = \">=3.10\"\ndynamic = [\"version\"]\ndependencies = []\n\n[tool.pixi.project]\nchannels = [\"conda-forge\", \"bioconda\"]\nplatforms = [\"linux-64\", \"osx-arm64\", \"osx-64\", \"win-64\"]\n\n[tool.pixi.feature.dev.tasks]\nrun-mypy = \"mypy my_project tests\"\nrun-ruff-check = \"ruff check my_project tests\"\nrun-ruff-format = \"ruff format my_project tests\"\nrun-pytest = \"pytest -x\"\n\n[project.optional-dependencies]\ndev = []\n\n[tool.pixi.environments]\ndefault = {features = [], solve-group = \"default\"}\ndev = {features = [\"dev\"], solve-group = \"default\"}\n\n[tool.hatch.version]\npath = \"my_project/_version.py\"\n\n[tool.mypy]\ncheck_untyped_defs = true\ndisallow_untyped_defs = true\n\n[[tool.mypy.overrides]]\nmodule = [\"tests.*\"]\ndisallow_untyped_defs = false\n\n[tool.pytest.ini_options]\nminversion = \"6.0\"\naddopts = \"--cov=my_project --cov-report term-missing --no-cov-on-fail\"\n\n[tool.coverage.report]\nexclude_lines = [\"if __name__ == .__main__.:\", \"pragma: no cover\"]\n\n[tool.ruff]\nline-length = 100\ntarget-version = \"py310\"\nfix = true\n\n[tool.ruff.lint]\nselect = [\n  \"E\",  # pycodestyle\n  \"B\",  # flake8-bugbear\n  \"W\",  # Warning\n  \"F\",  # pyflakes\n  \"UP\",  # pyupgrade\n  \"I001\",  # unsorted-imports\n  \"T201\",  # print found\n  \"T203\",  # pprint found\n  \"RUF022\",  # Unsorted __all__\n  \"RUF023\",  # Unforted __slots__\n]\nignore=[\n  # Recommended ignores by ruff when using formatter\n  \"E501\",\n  \"W191\",\n  \"E111\",\n  \"E114\",\n  \"E117\",\n  \"D206\",\n  \"D300\",\n  \"Q000\",\n  \"Q001\",\n  \"Q002\",\n  \"Q003\",\n  \"COM812\",\n  \"COM819\",\n  \"ISC001\",\n  \"ISC002\",\n]\n"
+"[build-system]\nrequires = [\"hatchling\"]\nbuild-backend = \"hatchling.build\"\n\n[project]\nname = \"my-project\"\ndescription = \"This is a test\"\nauthors = [\n  { name = \"Arthur Dent\", email = \"authur@heartofgold.com\" }\n]\nreadme = \"README.md\"\nrequires-python = \">=3.10\"\ndynamic = [\"version\"]\ndependencies = []\n\n[tool.pixi.workspace]\nchannels = [\"conda-forge\", \"bioconda\"]\nplatforms = [\"linux-64\", \"osx-arm64\", \"osx-64\", \"win-64\"]\n\n[tool.pixi.feature.dev.tasks]\nrun-mypy = \"mypy my_project tests\"\nrun-ruff-check = \"ruff check my_project tests\"\nrun-ruff-format = \"ruff format my_project tests\"\nrun-pytest = \"pytest -x\"\n\n[project.optional-dependencies]\ndev = []\n\n[tool.pixi.environments]\ndefault = {features = [], solve-group = \"default\"}\ndev = {features = [\"dev\"], solve-group = \"default\"}\n\n[tool.hatch.version]\npath = \"my_project/_version.py\"\n\n[tool.mypy]\ncheck_untyped_defs = true\ndisallow_untyped_defs = true\n\n[[tool.mypy.overrides]]\nmodule = [\"tests.*\"]\ndisallow_untyped_defs = false\n\n[tool.pytest.ini_options]\nminversion = \"6.0\"\naddopts = \"--cov=my_project --cov-report term-missing --no-cov-on-fail\"\n\n[tool.coverage.report]\nexclude_lines = [\"if __name__ == .__main__.:\", \"pragma: no cover\"]\n\n[tool.ruff]\nline-length = 100\ntarget-version = \"py310\"\nfix = true\n\n[tool.ruff.lint]\nselect = [\n  \"E\",  # pycodestyle\n  \"B\",  # flake8-bugbear\n  \"W\",  # Warning\n  \"F\",  # pyflakes\n  \"UP\",  # pyupgrade\n  \"I001\",  # unsorted-imports\n  \"T201\",  # print found\n  \"T203\",  # pprint found\n  \"RUF022\",  # Unsorted __all__\n  \"RUF023\",  # Unforted __slots__\n]\nignore=[\n  # Recommended ignores by ruff when using formatter\n  \"E501\",\n  \"W191\",\n  \"E111\",\n  \"E114\",\n  \"E117\",\n  \"D206\",\n  \"D300\",\n  \"Q000\",\n  \"Q001\",\n  \"Q002\",\n  \"Q003\",\n  \"COM812\",\n  \"COM819\",\n  \"ISC001\",\n  \"ISC002\",\n]\n"

-Original file line number
+Diff line change
 source: src/project_generator.rs
 expression: content
 ---
 -"[build-system]\nrequires = [\"hatchling\"]\nbuild-backend = \"hatchling.build\"\n\n[project]\nname = \"my-project\"\ndescription = \"This is a test\"\nauthors = [\n  { name = \"Arthur Dent\", email = \"[email protected]\" }\n]\nlicense = { file = \"LICENSE\" }\nreadme = \"README.md\"\nrequires-python = \">=3.10\"\ndynamic = [\"version\"]\ndependencies = []\n\n[tool.pixi.project]\nchannels = [\"conda-forge\", \"bioconda\"]\nplatforms = [\"linux-64\", \"osx-arm64\", \"osx-64\", \"win-64\"]\n\n[tool.pixi.feature.dev.tasks]\nrun-mypy = \"mypy my_project tests\"\nrun-ruff-check = \"ruff check my_project tests\"\nrun-ruff-format = \"ruff format my_project tests\"\nrun-pytest = \"pytest -x\"\n\n[project.optional-dependencies]\ndev = []\n\n[tool.pixi.environments]\ndefault = {features = [], solve-group = \"default\"}\ndev = {features = [\"dev\"], solve-group = \"default\"}\n\n[tool.hatch.version]\npath = \"my_project/_version.py\"\n\n[tool.mypy]\ncheck_untyped_defs = true\ndisallow_untyped_defs = true\n\n[[tool.mypy.overrides]]\nmodule = [\"tests.*\"]\ndisallow_untyped_defs = false\n\n[tool.pytest.ini_options]\nminversion = \"6.0\"\naddopts = \"--cov=my_project --cov-report term-missing --no-cov-on-fail\"\n\n[tool.coverage.report]\nexclude_lines = [\"if __name__ == .__main__.:\", \"pragma: no cover\"]\n\n[tool.ruff]\nline-length = 100\ntarget-version = \"py310\"\nfix = true\n\n[tool.ruff.lint]\nselect = [\n  \"E\",  # pycodestyle\n  \"B\",  # flake8-bugbear\n  \"W\",  # Warning\n  \"F\",  # pyflakes\n  \"UP\",  # pyupgrade\n  \"I001\",  # unsorted-imports\n  \"T201\",  # print found\n  \"T203\",  # pprint found\n  \"RUF022\",  # Unsorted __all__\n  \"RUF023\",  # Unforted __slots__\n]\nignore=[\n  # Recommended ignores by ruff when using formatter\n  \"E501\",\n  \"W191\",\n  \"E111\",\n  \"E114\",\n  \"E117\",\n  \"D206\",\n  \"D300\",\n  \"Q000\",\n  \"Q001\",\n  \"Q002\",\n  \"Q003\",\n  \"COM812\",\n  \"COM819\",\n  \"ISC001\",\n  \"ISC002\",\n]\n"
 +"[build-system]\nrequires = [\"hatchling\"]\nbuild-backend = \"hatchling.build\"\n\n[project]\nname = \"my-project\"\ndescription = \"This is a test\"\nauthors = [\n  { name = \"Arthur Dent\", email = \"[email protected]\" }\n]\nlicense = { file = \"LICENSE\" }\nreadme = \"README.md\"\nrequires-python = \">=3.10\"\ndynamic = [\"version\"]\ndependencies = []\n\n[tool.pixi.workspace]\nchannels = [\"conda-forge\", \"bioconda\"]\nplatforms = [\"linux-64\", \"osx-arm64\", \"osx-64\", \"win-64\"]\n\n[tool.pixi.feature.dev.tasks]\nrun-mypy = \"mypy my_project tests\"\nrun-ruff-check = \"ruff check my_project tests\"\nrun-ruff-format = \"ruff format my_project tests\"\nrun-pytest = \"pytest -x\"\n\n[project.optional-dependencies]\ndev = []\n\n[tool.pixi.environments]\ndefault = {features = [], solve-group = \"default\"}\ndev = {features = [\"dev\"], solve-group = \"default\"}\n\n[tool.hatch.version]\npath = \"my_project/_version.py\"\n\n[tool.mypy]\ncheck_untyped_defs = true\ndisallow_untyped_defs = true\n\n[[tool.mypy.overrides]]\nmodule = [\"tests.*\"]\ndisallow_untyped_defs = false\n\n[tool.pytest.ini_options]\nminversion = \"6.0\"\naddopts = \"--cov=my_project --cov-report term-missing --no-cov-on-fail\"\n\n[tool.coverage.report]\nexclude_lines = [\"if __name__ == .__main__.:\", \"pragma: no cover\"]\n\n[tool.ruff]\nline-length = 100\ntarget-version = \"py310\"\nfix = true\n\n[tool.ruff.lint]\nselect = [\n  \"E\",  # pycodestyle\n  \"B\",  # flake8-bugbear\n  \"W\",  # Warning\n  \"F\",  # pyflakes\n  \"UP\",  # pyupgrade\n  \"I001\",  # unsorted-imports\n  \"T201\",  # print found\n  \"T203\",  # pprint found\n  \"RUF022\",  # Unsorted __all__\n  \"RUF023\",  # Unforted __slots__\n]\nignore=[\n  # Recommended ignores by ruff when using formatter\n  \"E501\",\n  \"W191\",\n  \"E111\",\n  \"E114\",\n  \"E117\",\n  \"D206\",\n  \"D300\",\n  \"Q000\",\n  \"Q001\",\n  \"Q002\",\n  \"Q003\",\n  \"COM812\",\n  \"COM819\",\n  \"ISC001\",\n  \"ISC002\",\n]\n"