Reduce install doc redundancy

Replace redundant install instructions from the install doc by linking to the README. This change removes the need to update install methods in both places. Also, move the Bioformats Conda section to a deprecated section.

Author: yoda-vid

docs/install.md

@@ -12,78 +12,11 @@
 
 ## Installation Options
 
-### Quick install with Pip
+### Quick install
 
-Install MagellanMapper with its graphical interface and registration tools with Python >= 3.10 (see [Python versions](#python-version-support); [virtual environment](https://realpython.com/python-virtual-environments-a-primer/) recommended):
+See the [README quick install](https://github.com/sanderslab/magellanmapper/tree/tif_default_instructions?tab=readme-ov-file#quick-install) 
 
-```shell
-pip install "magellanmapper[most]"
-```
-
-Then launch MagellanMapper:
-
-```shell
-mm
-```
-
-Note: MM <1.7a1 installed import packages with `most`. For these versions, install with this command instead: `pip install "magellanmapper[gui,itk]"`
-
-See [below](#dependencies) for supported Python versions and adding install groups.
-
-See our [vignette](https://github.com/sanderslab/magellanmapper/blob/master/bin/sample_cmds_bash.ipynb) for getting started on MM!
-
-### Quick install with Conda
-
-If you use Conda (available [here](https://docs.conda.io/en/latest/miniconda.html)), you can install MagellanMapper into a new environment named `mag` (or replace with desired name):
-
-```shell
-conda env create -n mag -f https://raw.githubusercontent.com/sanderslab/magellanmapper/master/envs/environment_rel.yml
-```
-
-To run, activate the environment and launch MagellanMapper by `mm`:
-
-```shell
-conda activate mag
-mm
-```
-
-### Developer installs
-
-You can install directly from the source code, which lets you use the latest updates without reinstallation.
-
-First, download the repo:
-
-```shell
-git clone https://github.com/sanderslab/magellanmapper.git
-```
-
-Next, install it with Conda:
-
-```shell
-conda env create -n mag -f magellanmapper/environment.yml
-```
-
-or with Pip:
-
-```shell
-pip install -e "magellanmapper[most]"
-```
-
-MagellanMapper can be run as above.
-
-**Alternative:** Install with all extra packages in Conda. Java will be installed automatically in Conda to support more image formats.
-
-```shell
-conda env create -n mag -f magellanmapper/environment_all.yml
-```
-
-Or with Pip. Java needs to be installed before MM. Download Java from [here](https://www.azul.com/downloads/?package=jdk).
-
-```shell
-pip install -e "magellanmapper[all]" --extra-index-url https://pypi.fury.io/dd8/
-```
-
-The `all` group installs the GUI and file import tools (see [optional dependencies below](#optional-installation-groups)). The extra index accesses a few [customized dependencies](#custom-packages) for MagellanMapper.
+Python >= 3.10 supported. See below for [Python versions](#python-version-support)  and adding [install groups]((#dependencies)). [Virtual environment](https://realpython.com/python-virtual-environments-a-primer/) recommended).
 
 ### Optional installation groups
 
@@ -111,6 +44,26 @@ pip install -e ".[3d,gui]" # add two groups
 
 As of MM 1.6a2, the GUI can be excluded by installing the base group, eg without `[gui]` or `[most]`.
 
+### DEPRECATED: Install Bioformats/Javabridge support
+
+<details>
+
+Install with all extra packages in Conda. Java will be installed automatically in Conda to support more image formats.
+
+```shell
+conda env create -n mag -f magellanmapper/environment_all.yml
+```
+
+Or with Pip. Java needs to be installed before MM. Download Java from [here](https://www.azul.com/downloads/?package=jdk).
+
+```shell
+pip install -e "magellanmapper[all]" --extra-index-url https://pypi.fury.io/dd8/
+```
+
+The `all` group installs the GUI and file import tools (see [optional dependencies below](#optional-installation-groups)). The extra index accesses a few [customized dependencies](#custom-packages) for MagellanMapper.
+
+</details>
+
 ### DEPRECATED: Installer packages
 
 <details>