replace toInteger with toLong

[DLBPointon]

Description of the bug

Brought up by @muffato

Hi ToLA. I’ve fixed my pipelines but found some of your pipelines use toInteger. Be careful because it’s capped to 2^32-1 (~2 billion). I think it’s GET_LARGEST_SCAFFOLD.out.scaff_size that could cause an issue ? The largest mistletoe scaffolds were > 2 Gbp before being split for ENA, right ? toLong is the alternative.
I can’t remember what those counts in fastx_map_long_reads are.

ascc/subworkflows/local/generate_genomes/main.nf:    max_scaff_size  = GET_LARGEST_SCAFFOLD.out.scaff_size.toInteger()
genomeassembly/subworkflows/local/polishing_10X/main.nf:            [meta, rows[0].mean_depth.toFloat().round().toInteger()]
metagenomeassembly/subworkflows/sanger-tol/fastx_map_long_reads/main.nf:            def intcount = count.toInteger()
metagenomeassembly/subworkflows/sanger-tol/fastx_map_long_reads/main.nf:            def n_bins   = Math.ceil(intcount / size).toInteger()
metagenomeassembly/modules/sanger-tol/cramalign/gencramchunks/main.nf:    def n_bins   = Math.ceil(n_slices / size).toInteger()
treeval/subworkflows/local/selfcomp/main.nf:            sizeInGB < 1 ? 1 : sizeInGB.toInteger()  // Conditional operator for the logic
treeval/subworkflows/local/selfcomp/main.nf:            sizeInGB < 1 ? 1 : sizeInGB.toInteger()  // Conditional operator for the logic
treeval/subworkflows/local/generate_genome/main.nf:    max_scaff_size  = GET_LARGEST_SCAFFOLD.out.scaff_size.toInteger()

Command used and terminal output

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