Merge branch 'master' of github.com:scalableminds/webknossos-libs

Author: normanrz

cluster_tools/Changelog.md

@@ -7,7 +7,7 @@ and this project adheres to [Semantic Versioning](http://semver.org/) `MAJOR.MIN
 For upgrade instructions, please check the respective *Breaking Changes* sections.
 
 ## Unreleased
-[Commits](https://github.com/scalableminds/webknossos-libs/compare/v2.3.4...HEAD)
+[Commits](https://github.com/scalableminds/webknossos-libs/compare/v2.3.5...HEAD)
 
 ### Breaking Changes
 
@@ -18,6 +18,10 @@ For upgrade instructions, please check the respective *Breaking Changes* section
 ### Fixed
 
 
+## [2.3.5](https://github.com/scalableminds/webknossos-libs/releases/tag/v2.3.5) - 2025-05-13
+[Commits](https://github.com/scalableminds/webknossos-libs/compare/v2.3.4...v2.3.5)
+
+
 ## [2.3.4](https://github.com/scalableminds/webknossos-libs/releases/tag/v2.3.4) - 2025-05-12
 [Commits](https://github.com/scalableminds/webknossos-libs/compare/v2.3.3...v2.3.4)
 

docs/src/cli/index.md

@@ -45,6 +45,7 @@ webknossos --install-completion
 webknossos convert \
   --voxel-size 11.24,11.24,25 \
   --name great_dataset \
+  --downsample \
   data/source data/target
 
 

webknossos/Changelog.md

@@ -10,7 +10,7 @@ and this project adheres to [Semantic Versioning](http://semver.org/) `MAJOR.MIN
 For upgrade instructions, please check the respective _Breaking Changes_ sections.
 
 ## Unreleased
-[Commits](https://github.com/scalableminds/webknossos-libs/compare/v2.3.4...HEAD)
+[Commits](https://github.com/scalableminds/webknossos-libs/compare/v2.3.5...HEAD)
 
 ### Breaking Changes
 
@@ -21,6 +21,20 @@ For upgrade instructions, please check the respective _Breaking Changes_ section
 ### Fixed
 
 
+## [2.3.5](https://github.com/scalableminds/webknossos-libs/releases/tag/v2.3.5) - 2025-05-13
+[Commits](https://github.com/scalableminds/webknossos-libs/compare/v2.3.4...v2.3.5)
+
+### Added
+- Added `--downsample` flag to `webknossos convert` CLI command. [#1305](https://github.com/scalableminds/webknossos-libs/pull/1305)
+
+### Changed
+- Uses compression by default for `webknossos convert` CLI command. [#1305](https://github.com/scalableminds/webknossos-libs/pull/1305)
+
+### Fixed
+- Pinned `click<8.2.0` because of incompatibility with `typer`. [#1305](https://github.com/scalableminds/webknossos-libs/pull/1305)
+
+
+
 ## [2.3.4](https://github.com/scalableminds/webknossos-libs/releases/tag/v2.3.4) - 2025-05-12
 [Commits](https://github.com/scalableminds/webknossos-libs/compare/v2.3.3...v2.3.4)
 

webknossos/webknossos/cli/convert.py

@@ -110,6 +110,9 @@ def main(
     ] = None,
     compress: Annotated[
         bool, typer.Option(help="Enable compression of the target dataset.")
+    ] = True,
+    downsample: Annotated[
+        bool, typer.Option(help="Downsample the target dataset.")
     ] = False,
     batch_size: Annotated[
         int | None,
@@ -159,7 +162,7 @@ def main(
     voxel_size_with_unit = VoxelSize(voxel_size, unit)
 
     with get_executor_for_args(args=executor_args) as executor:
-        Dataset.from_images(
+        dataset = Dataset.from_images(
             source,
             target,
             name=name,
@@ -173,3 +176,6 @@ def main(
             batch_size=batch_size,
             layer_category=category.value if category else None,
         )
+    if downsample:
+        with get_executor_for_args(args=executor_args) as executor:
+            dataset.downsample(executor=executor)