wkcuber: use venv by default (except for Dockerfile & win build) (#410)

* wkcuber: use venv by default (except for Dockerfile)

* no venv for windows CI, use poetry config cmd

* add poetry.toml to gitignore, upgrade pip in windows CI

* fix win CI

* Update Dockerfile

Author: jstriebel

.github/workflows/ci.yml

@@ -97,14 +97,13 @@ jobs:
       if: ${{ needs.changes.outputs.wkcuber == 'true' }}
 
     - name: Check typing
-      run: |
-        ./typecheck.sh
+      run: poetry run ./typecheck.sh
 
     - name: Python tests
       run: poetry run pytest tests
 
     - name: CLI tests
-      run: tests/scripts/all_tests.sh
+      run: poetry run tests/scripts/all_tests.sh
 
     - name: Check if git is dirty
       run: |
@@ -133,6 +132,7 @@ jobs:
       shell: bash
       run: |
         pip install poetry
+        poetry config virtualenvs.create false --local
         poetry install
 
     - name: Decompress test data
@@ -176,7 +176,7 @@ jobs:
       run: poetry run pytest tests
 
     - name: CLI tests
-      run: tests/scripts/all_tests.sh
+      run: poetry run tests/scripts/all_tests.sh
 
   wkcuber_docker:
     needs: [webknossos_linux, wkcuber_linux, wkcuber_win, wkcuber_mac]

wkcuber/.gitignore

@@ -105,4 +105,6 @@ testdata/tiff_mag_2_reference
 .vscode/
 
 # MyPy
-.mypy_cache/
+.mypy_cache/
+
+/poetry.toml

wkcuber/Dockerfile

@@ -4,7 +4,6 @@ RUN mkdir /app
 WORKDIR /app
 
 COPY wkcuber/README.md /app
-COPY wkcuber/poetry.toml /app
 COPY wkcuber/poetry.lock /app
 COPY wkcuber/pyproject.toml /app
 
@@ -19,6 +18,7 @@ COPY webknossos/poetry.lock /webknossos/
 COPY webknossos/pyproject.toml /webknossos/
 COPY webknossos/README.md /webknossos/
 
+RUN poetry config virtualenvs.create false --local
 RUN poetry install --no-dev
 
 ENTRYPOINT [ "python", "-m" ]