Restore cubing main method which takes namespace args (#507)

* restore cubing main method which takes namespace args (aka cube_with_args)

* update and clean up changelogs

Author: philippotto

webknossos/Changelog.md

@@ -29,9 +29,6 @@ For upgrade instructions, please check the respective *Breaking Changes* section
 ## [v0.8.24](https://github.com/scalableminds/webknossos-libs/releases/tag/v0.8.24) - 2021-11-30
 [Commits](https://github.com/scalableminds/webknossos-libs/compare/v0.8.23...v0.8.24)
 
-### Fixed
-- Fixed `--version` CLI argument. [#493](https://github.com/scalableminds/webknossos-libs/pull/493)
-
 
 ## [v0.8.23](https://github.com/scalableminds/webknossos-libs/releases/tag/v0.8.23) - 2021-11-29
 [Commits](https://github.com/scalableminds/webknossos-libs/compare/v0.8.22...v0.8.23)

wkcuber/Changelog.md

@@ -12,14 +12,26 @@ For upgrade instructions, please check the respective *Breaking Changes* section
 ### Breaking Changes in Config & CLI
 
 ### Added
-- `wkcuber.convert_raw` conversion tool for raw binary data files. [#498](https://github.com/scalableminds/webknossos-libs/pull/498)
-- Added the `wkcuber` executable that is installed when the package is installed. [#495](https://github.com/scalableminds/webknossos-libs/pull/495)
+- Added importable `cube_with_args` function to main module of wkcuber. [#507](https://github.com/scalableminds/webknossos-libs/pull/507)
 
 ### Changed
 
 ### Fixed
 
 
+## [v0.8.25](https://github.com/scalableminds/webknossos-libs/releases/tag/v0.8.25) - 2021-12-07
+[Commits](https://github.com/scalableminds/webknossos-libs/compare/v0.8.24...v0.8.25)
+
+### Added
+- `wkcuber.convert_raw` conversion tool for raw binary data files. [#498](https://github.com/scalableminds/webknossos-libs/pull/498)
+- Added the `wkcuber` executable that is installed when the package is installed. [#495](https://github.com/scalableminds/webknossos-libs/pull/495)
+
+## [v0.8.24](https://github.com/scalableminds/webknossos-libs/releases/tag/v0.8.24) - 2021-11-30
+[Commits](https://github.com/scalableminds/webknossos-libs/compare/v0.8.23...v0.8.24)
+
+### Fixed
+- Fixed `--version` CLI argument. [#493](https://github.com/scalableminds/webknossos-libs/pull/493)
+
 ## [v0.8.23](https://github.com/scalableminds/webknossos-libs/releases/tag/v0.8.23) - 2021-11-29
 [Commits](https://github.com/scalableminds/webknossos-libs/compare/v0.8.18...v0.8.23)
 

wkcuber/wkcuber/__main__.py

@@ -15,7 +15,7 @@
     main as auto_detect_and_run_conversion,
 )
 from .versioning import get_available_version
-from argparse import ArgumentParser
+from argparse import Namespace, ArgumentParser
 from pathlib import Path
 
 
@@ -71,10 +71,7 @@ def create_parser() -> ArgumentParser:
     return parser
 
 
-def main() -> None:
-    args = create_parser().parse_args()
-    setup_logging(args)
-
+def cube_with_args(args: Namespace) -> None:
     if args.isotropic is not None:
         raise DeprecationWarning(
             "The flag 'isotropic' is deprecated. Consider using '--sampling_mode isotropic' instead."
@@ -107,5 +104,11 @@ def main() -> None:
     refresh_metadata(args.target_path)
 
 
+def main() -> None:
+    args = create_parser().parse_args()
+    setup_logging(args)
+    cube_with_args(args)
+
+
 if __name__ == "__main__":
     main()