upgrade zarrita (#949)

Author: normanrz

webknossos/poetry.lock

@@ -51,7 +51,7 @@ scikit-learn = "^1.0.1"
 scipy = "^1.9.0"
 typer = {extras = ["all"], version = "^0.9.0"}
 typing-extensions = "^4.0"
-universal-pathlib = "0.0.23"
+universal-pathlib = "0.1.3"
 wkw = "1.1.22"
 zarr = "^2.14.0"
 zipp = "^3.5.0"
@@ -63,7 +63,7 @@ JPype1 = { version = "^1.3.0", optional = true }
 pims = { version = "^0.6.0", optional = true }
 tifffile = { version = ">=2021.11.2", optional = true }
 pylibCZIrw = { version = "3.5.1", source = "scm", optional = true }
-zarrita = "0.1.0a18"
+zarrita = "0.1.0a21"
 
 [tool.poetry.extras]
 pims = ["pims"]

webknossos/pyproject.toml

@@ -565,15 +565,15 @@ def create(cls, path: Path, array_info: ArrayInfo) -> "ZarritaArray":
                         + array_info.chunk_shape.to_tuple(),
                         codecs=[
                             zarrita.codecs.transpose_codec("F"),
-                            zarrita.codecs.endian_codec(),
+                            zarrita.codecs.bytes_codec(),
                             zarrita.codecs.blosc_codec(
                                 typesize=array_info.voxel_type.itemsize
                             ),
                         ]
                         if array_info.compression_mode
                         else [
                             zarrita.codecs.transpose_codec("F"),
-                            zarrita.codecs.endian_codec(),
+                            zarrita.codecs.bytes_codec(),
                         ],
                     )
                 ],

webknossos/webknossos/dataset/_array.py

@@ -235,7 +235,9 @@ def warn_deprecated(deprecated_item: str, alternative_item: str) -> None:
 
 
 def is_fs_path(path: Path) -> bool:
-    return not isinstance(path, UPath)
+    from upath.implementations.local import PosixUPath, WindowsUPath
+
+    return not isinstance(path, UPath) or isinstance(path, (PosixUPath, WindowsUPath))
 
 
 def strip_trailing_slash(path: Path) -> Path: