v0.10.22

webknossos

Fixed

• Fixed a bug where some image sequences could not be read in layer_from_images. #817

v0.10.21

Relaxed the version requirements for the tifffile and imagecodecs libraries

v0.10.20

webknossos

Changed

• Make volume locations optional, allowing to parse segment information in future NML-only annotations. #814

Fixed

• annotation.temporary_volume_layer_copy() works also with empty volume annotations. #814

v0.10.19

webknossos

Breaking Changes

• The executor argument can now be passed to the following methods,
  args is deprecated now for those #805:
  • dataset.copy_dataset(…)
  • layer.upsample(…)
  • layer.downsample(…)
  • layer.downsample_mag(…)
  • layer.downsample_mag_list(…)
  • layer.redownsample(…)
  • mag_view.compress(…)
  • view.content_is_equal(…)

Added

• Added Dataset.from_images, which converts images to a Dataset, possibly consisting of multiple layers. [#808](#808
• Added Annotation.open_as_remote_dataset(…), which is a shorthand for Annotation.download(...).get_remote_annotation_dataset().
  #811
• skeleton.save() now also accepts paths with a .zip suffix. #811
• Added annotation.get_volume_layer_segments() to interact with information from the Segments tab in annotations. This method returns a dict from segment ids to an object containing optional segment name, color and anchor_position. #812
• Added convenience methods Dataset.compress and Dataset.downsample for compressing and downsampling all layers and mags in a dataset. #813
• Added examples for downloading segment masks from webKnossos and cubing & uploading tiff stacks. #813

wkcuber

Changed

• Some methods now take and executor argument instead of args or executor_args.
  This does not affect the CLI arguments. #805

v0.10.18

webknossos

Added

• Annotation.download() now accepts the keyword-only argument skip_volume_data, which can be set to True to omit downloading volume data. #806

v0.10.17

webknossos

Added

• Added annotation.get_remote_annotation_dataset() to get a streamed annotation dataset, which also reflects fallback layers or applied mappings. #794
• Added direct access to an underlying Zarr array with the MagView.get_zarr_array() method. #792

v0.10.16

webknossos

Added

• Added direct access to an underlying Zarr array with the MagView.get_zarr_array() method. #792

Changed

• Upgraded zarr and numcodecs. #798

wkcuber

Added

• The modules wkcuber and wkcuber.converter' also accept --pad` as a CLI argument to allow converting image data with differing image extents. #796

v0.10.15

wkcuber

Added

• The modules wkcuber and wkcuber.converter also accept --pad as a CLI argument to allow converting image data with differing image extents. #796

v0.10.14

webknossos

Changed

• dataset.add_copy_layer() and layer.add_copy_mag() now read and write the image data, not copying files. This allows to stream data from remote datasets. To continue using the filesystem copy mechanism, please use dataset.add_fs_copy_layer() or layer.add_fs_copy_mag(). #790

v0.10.13

webknossos

Breaking Changes

• Renamed chunk_size arguments to chunk_shape. chunk_size is still available as keyword-only argument, but deprecated. #706

Changed

• The largest_segment_id is optional now. #786