We can currently install the entire contents of a recipe.scif (the "publish one container" use case)
or break our recipe into more modular applications (the cluster "make your own container" example);
scif install samtools.scif
scif install bowtie.scif
scif install tophat.scif
There is a third use case where we have the first single file, but we only want to install a subset of applications. We should be able to do:
scif install recipe.scif samtools bowtie
to install all except tophat, for example.