API change: predict -> transform

Author: j-bac

doc/basics.ipynb

@@ -95,8 +95,8 @@
     "\n",
     "This can be done with any of these calls: \n",
     "- .fit(data).dimension_\n",
-    "- .fit(data).predict() \n",
-    "- .fit_predict(data)"
+    "- .fit(data).transform() \n",
+    "- .fit_transform(data)"
    ],
    "cell_type": "markdown",
    "metadata": {}
@@ -130,15 +130,15 @@
     "\n",
     "To compute local ID call either: \n",
     "- .fit\\_pw(data).dimension\\_pw_\n",
-    "- .fit_pw(data).predict_pw()\n",
-    "- .fit_predict_pw(data)\n",
+    "- .fit_pw(data).transform_pw()\n",
+    "- .fit_transform_pw(data)\n",
     "\n",
     "Several estimators also naturally compute the distribution of local ID to derive the global ID estimates. \n",
     "\n",
     "These estimators do not have a .fit\\_pw() method since .fit() already computes local estimates and you can simply call : \n",
     "- .fit(data).dimension\\_pw_\n",
-    "- .fit(data).predict_pw()\n",
-    "- .fit_predict_pw(data)\n"
+    "- .fit(data).transform_pw()\n",
+    "- .fit_transform_pw(data)\n"
    ],
    "cell_type": "markdown",
    "metadata": {}

doc/skdim.datasets.BenchmarkManifolds.generate.rst

@@ -1,4 +1,4 @@
-:github_url: https://github.com/theislab/scvelo/tree/master/scikit-dimension/skdim/datasets.py#L383-L436
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/datasets.py#L374-L427
 
 
 

doc/skdim.datasets.BenchmarkManifolds.rst

@@ -20,8 +20,4 @@ skdim.datasets.BenchmarkManifolds
 
       ~skdim.datasets.BenchmarkManifolds.generate
 
-   
-
-   
-   
 

doc/skdim.datasets.hyperBall.rst

@@ -1,4 +1,4 @@
-:github_url: https://github.com/theislab/scvelo/tree/master/scikit-dimension/skdim/datasets.py#L38-L69
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/datasets.py#L38-L69
 
 
 

doc/skdim.datasets.hyperSphere.rst

@@ -1,4 +1,4 @@
-:github_url: https://github.com/theislab/scvelo/tree/master/scikit-dimension/skdim/datasets.py#L72-L95
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/datasets.py#L72-L95
 
 
 

doc/skdim.datasets.hyperTwinPeaks.rst

@@ -1,4 +1,4 @@
-:github_url: https://github.com/theislab/scvelo/tree/master/scikit-dimension/skdim/datasets.py#L98-L122
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/datasets.py#L98-L122
 
 
 

doc/skdim.datasets.lineDiskBall.rst

@@ -1,4 +1,4 @@
-:github_url: https://github.com/theislab/scvelo/tree/master/scikit-dimension/skdim/datasets.py#L125-L187
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/datasets.py#L125-L187
 
 
 

doc/skdim.datasets.swissRoll3Sph.rst

@@ -1,4 +1,4 @@
-:github_url: https://github.com/theislab/scvelo/tree/master/scikit-dimension/skdim/datasets.py#L190-L245
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/datasets.py#L190-L245
 
 
 

doc/skdim.id.CorrInt.fit.rst

@@ -1,4 +1,4 @@
-:github_url: https://github.com/theislab/scvelo/tree/master/scikit-dimension/skdim/id/_CorrInt.py#L61-L87
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_CorrInt.py#L57-L83
 
 
 

doc/skdim.id.CorrInt.fit_pw.rst

@@ -1,4 +1,4 @@
-:github_url: https://github.com/theislab/scvelo/tree/master/scikit-dimension/skdim/id/_CorrInt.py#L155-L201
+:github_url: https://github.com/j-bac/scikit-dimension/tree/master/scikit-dimension/skdim/id/_CorrInt.py#L207-L253