Merge branch 'main' into gui-select-reference

Author: jokasimr

docs/user-guide/installation.md

@@ -1,6 +1,6 @@
 # Installation
 
-To install ESSreflectometry and all of its dependencies, use
+To install ESSreflectometry and all of its required dependencies, use
 
 `````{tab-set}
 ````{tab-item} pip
@@ -14,3 +14,19 @@ conda install -c conda-forge -c scipp essreflectometry
 ```
 ````
 `````
+
+To install ESSreflectometry and all of its dependencies,
+including dependencies used in the graphical user interface for batch reduction, use
+
+`````{tab-set}
+````{tab-item} pip
+```sh
+pip install essreflectometry[all]
+```
+````
+````{tab-item} conda
+```sh
+conda install -c conda-forge -c scipp essreflectometry ipywidgets ipydatagrid ipytree pythreejs
+```
+````
+`````

pyproject.toml

@@ -35,17 +35,13 @@ dependencies = [
   "python-dateutil",
   "graphviz",
   "plopp",
-  "pythreejs",
   "orsopy",
   "sciline>=24.6.0",
   "scipp>=24.09.1",  # Fixed new hist/bin API
   "scippneutron>=24.7.0",
   "scippnexus>=24.9.1",
   "essreduce",
   "pandas",
-  "ipywidgets",
-  "ipydatagrid",
-  "ipytree",
 ]
 
 dynamic = ["version"]
@@ -55,6 +51,12 @@ test = [
     "pytest",
     "pooch",
 ]
+all = [
+  "ipywidgets",
+  "ipydatagrid",
+  "ipytree",
+  "pythreejs",
+]
 
 [project.urls]
 "Bug Tracker" = "https://github.com/scipp/essreflectometry/issues"

requirements/base.in

@@ -6,14 +6,10 @@ dask
 python-dateutil
 graphviz
 plopp
-pythreejs
 orsopy
 sciline>=24.6.0
 scipp>=24.09.1
 scippneutron>=24.7.0
 scippnexus>=24.9.1
 essreduce
 pandas
-ipywidgets
-ipydatagrid
-ipytree

requirements/base.txt

@@ -1,4 +1,4 @@
-# SHA1:f969ab6f386658dc46c7b372a54f9287f240403c
+# SHA1:e1f1193e2c78c1dda6ffc784197fb6babbad9245
 #
 # This file is autogenerated by pip-compile-multi
 # To update, run:
@@ -7,42 +7,28 @@
 #
 annotated-types==0.7.0
     # via pydantic
-asttokens==3.0.0
-    # via stack-data
-bqplot==0.12.44
-    # via ipydatagrid
 click==8.1.8
     # via dask
 cloudpickle==3.1.1
     # via dask
-comm==0.2.2
-    # via ipywidgets
-contourpy==1.3.1
+contourpy==1.3.2
     # via matplotlib
 cyclebane==24.10.0
     # via sciline
 cycler==0.12.1
     # via matplotlib
-dask==2025.3.0
+dask==2025.4.0
     # via -r base.in
-decorator==5.2.1
-    # via ipython
 dnspython==2.7.0
     # via email-validator
 email-validator==2.2.0
     # via scippneutron
 essreduce==25.4.1
     # via -r base.in
-exceptiongroup==1.2.2
-    # via ipython
-executing==2.2.0
-    # via stack-data
 fonttools==4.57.0
     # via matplotlib
 fsspec==2025.3.2
     # via dask
-gast==0.4.0
-    # via py2vega
 graphviz==0.20.3
     # via -r base.in
 h5py==3.13.0
@@ -53,26 +39,6 @@ idna==3.10
     # via email-validator
 importlib-metadata==8.6.1
     # via dask
-ipydatagrid==1.4.0
-    # via -r base.in
-ipydatawidgets==4.3.5
-    # via pythreejs
-ipython==8.35.0
-    # via ipywidgets
-ipytree==0.2.2
-    # via -r base.in
-ipywidgets==8.1.5
-    # via
-    #   -r base.in
-    #   bqplot
-    #   ipydatagrid
-    #   ipydatawidgets
-    #   ipytree
-    #   pythreejs
-jedi==0.19.2
-    # via ipython
-jupyterlab-widgets==3.0.13
-    # via ipywidgets
 kiwisolver==1.4.8
     # via matplotlib
 lazy-loader==0.4
@@ -85,63 +51,41 @@ matplotlib==3.10.1
     # via
     #   mpltoolbox
     #   plopp
-matplotlib-inline==0.1.7
-    # via ipython
 mpltoolbox==24.5.1
     # via scippneutron
 networkx==3.4.2
     # via cyclebane
-numpy==2.2.4
+numpy==2.2.5
     # via
-    #   bqplot
     #   contourpy
     #   h5py
-    #   ipydatawidgets
     #   matplotlib
     #   mpltoolbox
     #   pandas
-    #   pythreejs
     #   scipp
     #   scippneutron
     #   scipy
 orsopy==1.2.1
     # via -r base.in
-packaging==24.2
+packaging==25.0
     # via
     #   dask
     #   lazy-loader
     #   matplotlib
 pandas==2.2.3
-    # via
-    #   -r base.in
-    #   bqplot
-    #   ipydatagrid
-parso==0.8.4
-    # via jedi
+    # via -r base.in
 partd==1.4.2
     # via dask
-pexpect==4.9.0
-    # via ipython
-pillow==11.1.0
+pillow==11.2.1
     # via matplotlib
-plopp==25.3.0
+plopp==25.4.1
     # via
     #   -r base.in
     #   scippneutron
-prompt-toolkit==3.0.50
-    # via ipython
-ptyprocess==0.7.0
-    # via pexpect
-pure-eval==0.2.3
-    # via stack-data
-py2vega==0.6.1
-    # via ipydatagrid
 pydantic==2.11.3
     # via scippneutron
 pydantic-core==2.33.1
     # via pydantic
-pygments==2.19.1
-    # via ipython
 pyparsing==3.2.3
     # via matplotlib
 python-dateutil==2.9.0.post0
@@ -151,8 +95,6 @@ python-dateutil==2.9.0.post0
     #   pandas
     #   scippneutron
     #   scippnexus
-pythreejs==2.4.2
-    # via -r base.in
 pytz==2025.2
     # via pandas
 pyyaml==6.0.2
@@ -184,28 +126,12 @@ scipy==1.15.2
     #   scippnexus
 six==1.17.0
     # via python-dateutil
-stack-data==0.6.3
-    # via ipython
 toolz==1.0.0
     # via
     #   dask
     #   partd
-traitlets==5.14.3
-    # via
-    #   bqplot
-    #   comm
-    #   ipython
-    #   ipywidgets
-    #   matplotlib-inline
-    #   pythreejs
-    #   traittypes
-traittypes==0.2.1
-    # via
-    #   bqplot
-    #   ipydatawidgets
-typing-extensions==4.13.1
+typing-extensions==4.13.2
     # via
-    #   ipython
     #   pydantic
     #   pydantic-core
     #   sciline
@@ -214,9 +140,5 @@ typing-inspection==0.4.0
     # via pydantic
 tzdata==2025.2
     # via pandas
-wcwidth==0.2.13
-    # via prompt-toolkit
-widgetsnbextension==4.0.13
-    # via ipywidgets
 zipp==3.21.0
     # via importlib-metadata

requirements/basetest.txt

@@ -15,7 +15,7 @@ idna==3.10
     # via requests
 iniconfig==2.1.0
     # via pytest
-packaging==24.2
+packaging==25.0
     # via
     #   pooch
     #   pytest
@@ -31,5 +31,5 @@ requests==2.32.3
     # via pooch
 tomli==2.2.1
     # via pytest
-urllib3==2.3.0
+urllib3==2.4.0
     # via requests

requirements/ci.txt

@@ -27,7 +27,7 @@ gitpython==3.1.44
     # via -r ci.in
 idna==3.10
     # via requests
-packaging==24.2
+packaging==25.0
     # via
     #   -r ci.in
     #   pyproject-api
@@ -50,9 +50,9 @@ tomli==2.2.1
     #   tox
 tox==4.25.0
     # via -r ci.in
-typing-extensions==4.13.1
+typing-extensions==4.13.2
     # via tox
-urllib3==2.3.0
+urllib3==2.4.0
     # via requests
 virtualenv==20.30.0
     # via tox

requirements/dev.txt

@@ -26,17 +26,17 @@ async-lru==2.0.5
     # via jupyterlab
 cffi==1.17.1
     # via argon2-cffi-bindings
-copier==9.6.0
+copier==9.7.1
     # via -r dev.in
 dunamai==1.23.1
     # via copier
 fqdn==1.5.1
     # via jsonschema
 funcy==2.0
     # via copier
-h11==0.14.0
+h11==0.16.0
     # via httpcore
-httpcore==1.0.7
+httpcore==1.0.9
     # via httpx
 httpx==0.28.1
     # via jupyterlab
@@ -65,7 +65,7 @@ jupyter-server==2.15.0
     #   notebook-shim
 jupyter-server-terminals==0.5.3
     # via jupyter-server
-jupyterlab==4.4.0
+jupyterlab==4.4.1
     # via -r dev.in
 jupyterlab-server==2.27.3
     # via jupyterlab
@@ -75,7 +75,7 @@ overrides==7.7.0
     # via jupyter-server
 pathspec==0.12.1
     # via copier
-pip-compile-multi==2.8.0
+pip-compile-multi==3.0.0
     # via -r dev.in
 pip-tools==7.4.1
     # via pip-compile-multi

requirements/docs.in

@@ -10,3 +10,6 @@ sphinx-copybutton
 sphinx-design
 pooch
 ipympl
+ipywidgets
+ipydatagrid
+ipytree