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Remove stub index pages from _toc, leave as redirects.
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_toc.yml

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parts:
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- caption: Getting started with Python for Science
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chapters:
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- file: intro/index
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- file: intro/intro
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- file: intro/language/python_language
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sections:
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- file: intro/help/help
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- caption: Advanced topics
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chapters:
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- file: advanced/index
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- file: advanced/advanced_python/index
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- file: advanced/advanced_numpy/index
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- file: advanced/debugging/index
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- file: advanced/interfacing_with_c/interfacing_with_c
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- caption: Packages and applications
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chapters:
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- file: packages/index
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- file: packages/statistics/index
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- file: packages/sympy
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- file: packages/scikit-image/index

advanced/index.md

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(advanced-topics-part)=
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# Introduction to advanced topics
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This part of the _Scientific Python Lectures_ is dedicated to advanced usage.
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It strives to educate the proficient Python coder to be an expert and
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tackles various specific topics.
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See the "Advanced topics" section in the table of contents.

intro/index.md

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# Introduction to getting started
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This part of the _Scientific Python Lectures_ is a self-contained
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introduction to everything that is needed to use Python for science,
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from the language itself, to numerical computing or plotting.
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See the "Getting started with Python for Science" section in the table of contents.

packages/index.md

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(applications-part)=
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# Introduction to packages and applications
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This part of the _Scientific Python Lectures_ is dedicated to various
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scientific packages useful for extended needs.
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See the "Packages and applications" section in the table of contents.

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