requirements_updated.txt

# This file may be used to create an environment using:
# $ conda create --name <env> --file <this file>
# platform: linux-64
_libgcc_mutex=0.1=conda_forge
_openmp_mutex=4.5=2_gnu
aioeasywebdav=2.4.0=pyha770c72_0
aiohttp=3.8.4=py310h2372a71_1
aiosignal=1.3.1=pyhd8ed1ab_0
alsa-lib=1.2.9=hd590300_0
amply=0.1.5=pyhd8ed1ab_0
appdirs=1.4.4=pyh9f0ad1d_0
argcomplete=3.1.1=pyhd8ed1ab_0
argh=0.27.2=pyhd8ed1ab_0
async-timeout=4.0.2=pyhd8ed1ab_0
attmap=0.13.2=pyhd8ed1ab_0
attrs=23.1.0=pyh71513ae_1
backports=1.0=pyhd8ed1ab_3
backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0
bcrypt=3.2.2=py310h5764c6d_1
bedtools=2.31.0=hf5e1c6e_2
biopython=1.81=py310h1fa729e_0
boltons=23.0.0=pyhd8ed1ab_0
boost-cpp=1.78.0=h6582d0a_3
boto3=1.26.153=pyhd8ed1ab_0
botocore=1.29.153=pyhd8ed1ab_0
brotlipy=0.7.0=py310h5764c6d_1005
bzip2=1.0.8=h7f98852_4
c-ares=1.19.1=hd590300_0
ca-certificates=2023.5.7=hbcca054_0
cachetools=5.3.0=pyhd8ed1ab_0
cairo=1.16.0=hbbf8b49_1016
certifi=2023.5.7=pyhd8ed1ab_0
cffi=1.15.1=py310h255011f_3
charset-normalizer=3.1.0=pyhd8ed1ab_0
coin-or-cbc=2.10.10=h9002f0b_0
coin-or-cgl=0.60.7=h516709c_0
coin-or-clp=1.17.8=h1ee7a9c_0
coin-or-osi=0.108.8=ha2443b9_0
coin-or-utils=2.11.9=hee58242_0
coincbc=2.10.10=0_metapackage
colorama=0.4.6=pyhd8ed1ab_0
conda=23.3.1=py310hff52083_0
conda-package-handling=2.0.2=pyh38be061_0
conda-package-streaming=0.8.0=pyhd8ed1ab_0
configargparse=1.5.3=pyhd8ed1ab_0
connection_pool=0.0.3=pyhd3deb0d_0
cryptography=41.0.1=py310h75e40e8_0
curl=8.1.2=h409715c_0
cutadapt=4.4=py310h4b81fae_1
datrie=0.8.2=py310h5764c6d_6
defusedxml=0.7.1=pyhd8ed1ab_0
dnaio=0.10.0=py310h4b81fae_3
docutils=0.20.1=py310hff52083_0
dpath=2.1.6=pyha770c72_0
dropbox=11.36.2=pyhd8ed1ab_0
exceptiongroup=1.1.1=pyhd8ed1ab_0
expat=2.5.0=hcb278e6_1
fastqc=0.12.1=hdfd78af_0
filechunkio=1.8=py_2
filelock=3.12.2=pyhd8ed1ab_0
fmt=9.1.0=h924138e_0
font-ttf-dejavu-sans-mono=2.37=hab24e00_0
font-ttf-inconsolata=3.000=h77eed37_0
font-ttf-source-code-pro=2.038=h77eed37_0
font-ttf-ubuntu=0.83=hab24e00_0
fontconfig=2.14.2=h14ed4e7_0
fonts-conda-ecosystem=1=0
fonts-conda-forge=1=0
freetype=2.12.1=hca18f0e_1
frozenlist=1.3.3=py310h5764c6d_0
ftputil=5.0.4=pyhd8ed1ab_0
gettext=0.21.1=h27087fc_0
gffutils=0.11.1=pyh7cba7a3_0
giflib=5.2.1=h0b41bf4_3
gitdb=4.0.10=pyhd8ed1ab_0
gitpython=3.1.31=pyhd8ed1ab_0
google-api-core=2.11.1=pyhd8ed1ab_0
google-api-python-client=2.89.0=pyhd8ed1ab_0
google-auth=2.20.0=pyh1a96a4e_0
google-auth-httplib2=0.1.0=pyhd8ed1ab_1
google-cloud-core=2.3.2=pyhd8ed1ab_0
google-cloud-storage=2.9.0=pyh1a96a4e_0
google-crc32c=1.1.2=py310he8fe98e_4
google-resumable-media=2.5.0=pyhd8ed1ab_0
googleapis-common-protos=1.59.1=pyhd8ed1ab_0
graphite2=1.3.13=h58526e2_1001
grpcio=1.55.1=py310h1b8f574_1
harfbuzz=7.3.0=hdb3a94d_0
hdf5=1.12.1=nompi_h4df4325_104
htslib=1.17=h81da01d_2
httplib2=0.22.0=pyhd8ed1ab_0
humanfriendly=10.0=py310hff52083_4
icu=72.1=hcb278e6_0
idna=3.4=pyhd8ed1ab_0
importlib-metadata=6.6.0=pyha770c72_0
importlib_resources=5.12.0=pyhd8ed1ab_0
iniconfig=2.0.0=pyhd8ed1ab_0
isa-l=2.30.0=ha770c72_4
jinja2=3.1.2=pyhd8ed1ab_1
jmespath=1.0.1=pyhd8ed1ab_0
jsonpatch=1.32=pyhd8ed1ab_0
jsonpointer=2.0=py_0
jsonschema=4.17.3=pyhd8ed1ab_0
jupyter_core=5.3.1=py310hff52083_0
kallisto=0.48.0=h15996b6_2
keyutils=1.6.1=h166bdaf_0
krb5=1.20.1=h81ceb04_0
labrat=0.3.0=pyhdfd78af_1
lcms2=2.15=haa2dc70_1
ld_impl_linux-64=2.40=h41732ed_0
lerc=4.0.0=h27087fc_0
libabseil=20230125.2=cxx17_h59595ed_2
libarchive=3.6.2=h039dbb9_1
libblas=3.9.0=17_linux64_openblas
libcblas=3.9.0=17_linux64_openblas
libcrc32c=1.1.2=h9c3ff4c_0
libcups=2.3.3=h36d4200_3
libcurl=8.1.2=h409715c_0
libdeflate=1.18=h0b41bf4_0
libedit=3.1.20191231=he28a2e2_2
libev=4.33=h516909a_1
libexpat=2.5.0=hcb278e6_1
libffi=3.4.2=h7f98852_5
libgcc-ng=13.1.0=he5830b7_0
libgfortran-ng=13.1.0=h69a702a_0
libgfortran5=13.1.0=h15d22d2_0
libglib=2.76.3=hebfc3b9_0
libgomp=13.1.0=he5830b7_0
libgrpc=1.55.1=h59456c1_1
libiconv=1.17=h166bdaf_0
libjpeg-turbo=2.1.5.1=h0b41bf4_0
liblapack=3.9.0=17_linux64_openblas
liblapacke=3.9.0=17_linux64_openblas
libmamba=1.4.2=hcea66bb_0
libmambapy=1.4.2=py310h1428755_0
libnghttp2=1.52.0=h61bc06f_0
libnsl=2.0.0=h7f98852_0
libopenblas=0.3.23=pthreads_h80387f5_0
libpng=1.6.39=h753d276_0
libprotobuf=4.23.2=hd1fb520_5
libsodium=1.0.18=h36c2ea0_1
libsolv=0.7.24=h3eb15da_0
libsqlite=3.42.0=h2797004_0
libssh2=1.11.0=h0841786_0
libstdcxx-ng=13.1.0=hfd8a6a1_0
libtiff=4.5.1=h8b53f26_0
libuuid=2.38.1=h0b41bf4_0
libwebp-base=1.3.0=h0b41bf4_0
libxcb=1.15=h0b41bf4_0
libxml2=2.11.4=h0d562d8_0
libzlib=1.2.13=hd590300_5
logmuse=0.2.6=pyh8c360ce_0
lz4-c=1.9.4=hcb278e6_0
lzo=2.10=h516909a_1000
mamba=1.4.2=py310h51d5547_0
markdown-it-py=3.0.0=pyhd8ed1ab_0
markupsafe=2.1.3=py310h2372a71_0
mdurl=0.1.0=pyhd8ed1ab_0
multidict=6.0.4=py310h1fa729e_0
nbformat=5.9.0=pyhd8ed1ab_0
ncurses=6.4=hcb278e6_0
numpy=1.24.3=py310ha4c1d20_0
oauth2client=4.1.3=py_0
openjdk=20.0.0=h8e330f5_0
openssl=3.1.1=hd590300_1
packaging=23.1=pyhd8ed1ab_0
pandas=2.0.2=py310h7cbd5c2_0
paramiko=3.2.0=pyhd8ed1ab_0
patsy=0.5.3=pyhd8ed1ab_0
pbzip2=1.1.13=0
pcre2=10.40=hc3806b6_0
peppy=0.35.5=pyhd8ed1ab_0
perl=5.32.1=2_h7f98852_perl5
pigz=2.6=h27826a3_0
pip=23.1.2=pyhd8ed1ab_0
pixman=0.40.0=h36c2ea0_0
pkgutil-resolve-name=1.3.10=pyhd8ed1ab_0
plac=1.3.5=pyhd8ed1ab_0
platformdirs=3.5.3=pyhd8ed1ab_0
pluggy=1.0.0=pyhd8ed1ab_5
ply=3.11=py_1
pooch=1.7.0=pyha770c72_3
prettytable=3.7.0=pyhd8ed1ab_0
protobuf=4.23.2=py310hb875b13_1
psutil=5.9.5=py310h1fa729e_0
pthread-stubs=0.4=h36c2ea0_1001
pulp=2.7.0=py310hff52083_0
pyasn1=0.4.8=py_0
pyasn1-modules=0.2.7=py_0
pybind11-abi=4=hd8ed1ab_3
pycosat=0.6.4=py310h5764c6d_1
pycparser=2.21=pyhd8ed1ab_0
pyfaidx=0.7.2.1=pyh7cba7a3_1
pygments=2.15.1=pyhd8ed1ab_0
pynacl=1.5.0=py310h5764c6d_2
pyopenssl=23.2.0=pyhd8ed1ab_1
pyparsing=3.0.9=pyhd8ed1ab_0
pyrsistent=0.19.3=py310h1fa729e_0
pysftp=0.2.9=py_1
pysocks=1.7.1=pyha2e5f31_6
pytest=7.3.2=pyhd8ed1ab_0
python=3.10.11=he550d4f_0_cpython
python-dateutil=2.8.2=pyhd8ed1ab_0
python-fastjsonschema=2.17.1=pyhd8ed1ab_0
python-irodsclient=1.1.8=pyhd8ed1ab_0
python-isal=1.1.0=py310h2372a71_2
python-tzdata=2023.3=pyhd8ed1ab_0
python_abi=3.10=3_cp310
pytz=2023.3=pyhd8ed1ab_0
pyu2f=0.1.5=pyhd8ed1ab_0
pyvcf3=1.0.3=pyhdfd78af_0
pyyaml=6.0=py310h5764c6d_5
re2=2023.03.02=h8c504da_0
readline=8.2=h8228510_1
regtools=1.0.0=hdcf5f25_2
reproc=14.2.4=h0b41bf4_0
reproc-cpp=14.2.4=hcb278e6_0
requests=2.31.0=pyhd8ed1ab_0
reretry=0.11.8=pyhd8ed1ab_0
rich=13.4.2=pyhd8ed1ab_0
rna-seqc=2.3.5=ha241645_5
rsa=4.9=pyhd8ed1ab_0
ruamel.yaml=0.17.31=py310h2372a71_0
ruamel.yaml.clib=0.2.7=py310h1fa729e_1
s3transfer=0.6.1=pyhd8ed1ab_0
salmon=0.14.2=ha0cc327_0
samtools=1.17=hd87286a_1
scipy=1.10.1=py310ha4c1d20_3
setuptools=67.7.2=pyhd8ed1ab_0
setuptools-scm=7.1.0=pyhd8ed1ab_0
simplejson=3.19.1=py310h1fa729e_0
six=1.16.0=pyh6c4a22f_0
slacker=0.14.0=py_0
smart_open=6.3.0=pyhd8ed1ab_1
smmap=3.0.5=pyh44b312d_0
snakemake=7.28.2=hdfd78af_0
snakemake-minimal=7.28.2=pyhdfd78af_0
star=2.7.10b=h6b7c446_1
statsmodels=0.14.0=py310h278f3c1_1
stone=3.3.1=pyhd8ed1ab_0
stopit=1.1.2=py_0
tabulate=0.9.0=pyhd8ed1ab_1
tbb=2020.2=h4bd325d_4
throttler=1.2.1=pyhd8ed1ab_0
tk=8.6.12=h27826a3_0
tomli=2.0.1=pyhd8ed1ab_0
toolz=0.12.0=pyhd8ed1ab_0
toposort=1.10=pyhd8ed1ab_0
tqdm=4.65.0=pyhd8ed1ab_1
traitlets=5.9.0=pyhd8ed1ab_0
typing-extensions=4.6.3=hd8ed1ab_0
typing_extensions=4.6.3=pyha770c72_0
tzdata=2023c=h71feb2d_0
ubiquerg=0.6.2=pyhd8ed1ab_0
uritemplate=4.1.1=pyhd8ed1ab_0
urllib3=1.26.15=pyhd8ed1ab_0
veracitools=0.1.3=py_0
wcwidth=0.2.6=pyhd8ed1ab_0
wheel=0.40.0=pyhd8ed1ab_0
wrapt=1.15.0=py310h1fa729e_0
xopen=1.7.0=py310hff52083_2
xorg-fixesproto=5.0=h7f98852_1002
xorg-inputproto=2.3.2=h7f98852_1002
xorg-kbproto=1.0.7=h7f98852_1002
xorg-libice=1.0.10=h7f98852_0
xorg-libsm=1.2.3=hd9c2040_1000
xorg-libx11=1.8.6=h8ee46fc_0
xorg-libxau=1.0.11=hd590300_0
xorg-libxdmcp=1.1.3=h7f98852_0
xorg-libxext=1.3.4=h0b41bf4_2
xorg-libxfixes=5.0.3=h7f98852_1004
xorg-libxi=1.7.10=h7f98852_0
xorg-libxrender=0.9.10=h7f98852_1003
xorg-libxt=1.3.0=hd590300_0
xorg-libxtst=1.2.3=h7f98852_1002
xorg-recordproto=1.14.2=h7f98852_1002
xorg-renderproto=0.11.1=h7f98852_1002
xorg-xextproto=7.3.0=h0b41bf4_1003
xorg-xproto=7.0.31=h7f98852_1007
xz=5.2.6=h166bdaf_0
yaml=0.2.5=h7f98852_2
yaml-cpp=0.7.0=h27087fc_2
yarl=1.9.2=py310h2372a71_0
yte=1.5.1=pyha770c72_2
zipp=3.15.0=pyhd8ed1ab_0
zlib=1.2.13=hd590300_5
zstandard=0.19.0=py310hdeb6495_1
zstd=1.5.2=h3eb15da_6