test run

Author: Intron7

.codecov.yml

@@ -0,0 +1,16 @@
+# Based on pydata/xarray/anndata/scanpy
+codecov:
+  require_ci_to_pass: false
+
+coverage:
+  status:
+    project:
+      default:
+        # Require 75% coverage
+        target: 75
+    changes: false
+
+comment:
+  layout: "diff, flags, files"
+  behavior: once
+  require_base: false

.github/workflows/test-gpu.yml

@@ -88,17 +88,31 @@ jobs:
 
       - name: Run tests
         run: |
+          mkdir -p test-data
           if [[ "${{ matrix.env.name }}" == *"stable"* ]]; then
-            uvx hatch run ${{ matrix.env.name }}:run-cov
+            uvx hatch run ${{ matrix.env.name }}:run-cov -v --color=yes --junitxml=test-data/test-results.xml
+            uvx hatch run ${{ matrix.env.name }}:cov-combine
+            uvx hatch run ${{ matrix.env.name }}:coverage xml
+            uvx hatch run ${{ matrix.env.name }}:cov-report
           else
-            uvx hatch run ${{ matrix.env.name }}:run
+            uvx hatch run ${{ matrix.env.name }}:run -v --color=yes
           fi
 
-      - name: Upload coverage to Codecov
+      - name: Upload test results
+        if: ${{ !cancelled() && contains(matrix.env.name, 'stable') }}
+        uses: codecov/codecov-action@v5
+        with:
+          report_type: test_results
+          files: test-data/test-results.xml
+          use_oidc: true
+          fail_ci_if_error: false
+
+      - name: Upload coverage data
         if: contains(matrix.env.name, 'stable')
         uses: codecov/codecov-action@v5
         with:
-          files: coverage.xml
+          files: test-data/coverage.xml
+          use_oidc: true
           fail_ci_if_error: false
 
   test-prerelease:

hatch.toml

@@ -5,8 +5,6 @@ features = [ "dev" ]
 [envs.hatch-test]
 default-args = [  ]
 features = [ "test" ]
-scripts.run = "pytest"
-scripts.run-cov = "pytest --cov=rapids_singlecell --cov-report=xml --cov-report=term"
 
 # Select CUDA feature per matrix
 overrides.matrix.cuda.features = [

pyproject.toml

@@ -136,3 +136,19 @@ packages = [ 'src/rapids_singlecell', 'src/testing' ]
 [tool.codespell]
 skip = '*.ipynb,*.csv'
 ignore-words-list = "nd"
+
+[tool.coverage.run]
+data_file = "test-data/coverage"
+source_pkgs = [ "rapids_singlecell" ]
+omit = [ "tests/*", "src/testing/*" ]
+
+[tool.coverage.xml]
+output = "test-data/coverage.xml"
+
+[tool.coverage.paths]
+source = [ "./src", "**/site-packages" ]
+
+[tool.coverage.report]
+exclude_also = [
+    "if TYPE_CHECKING:",
+]