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@Zethson Zethson commented Jun 7, 2025

TODO

  • Discuss what to do with settings.figdir
  • Deprecate there or in savefig_or_show

@Zethson Zethson added this to the 1.12.0 milestone Jun 7, 2025
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codecov bot commented Jun 7, 2025

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 76.72%. Comparing base (d04ab0a) to head (934906c).
✅ All tests successful. No failed tests found.

Additional details and impacted files
@@            Coverage Diff             @@
##             main    #3675      +/-   ##
==========================================
+ Coverage   76.56%   76.72%   +0.16%     
==========================================
  Files         115      115              
  Lines       12402    12389      -13     
==========================================
+ Hits         9496     9506      +10     
+ Misses       2906     2883      -23     
Files with missing lines Coverage Δ
src/scanpy/plotting/_anndata.py 85.55% <ø> (ø)
src/scanpy/plotting/_docs.py 100.00% <ø> (ø)
src/scanpy/plotting/_preprocessing.py 86.79% <ø> (ø)
src/scanpy/plotting/_stacked_violin.py 86.13% <ø> (ø)
src/scanpy/plotting/_tools/__init__.py 75.88% <ø> (ø)
src/scanpy/plotting/_tools/paga.py 66.60% <ø> (ø)
src/scanpy/plotting/_tools/scatterplots.py 83.13% <ø> (ø)
src/scanpy/plotting/_utils.py 64.22% <100.00%> (+3.63%) ⬆️

... and 1 file with indirect coverage changes

Signed-off-by: Lukas Heumos <[email protected]>
Zethson added 3 commits June 7, 2025 09:51
Signed-off-by: Lukas Heumos <[email protected]>
Signed-off-by: Lukas Heumos <[email protected]>
Signed-off-by: Lukas Heumos <[email protected]>
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Saving plots results in a prefixed filename, regardless of sc.settings.figdir

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