cleanup

Author: bernheder

CHANGELOG.md

@@ -1,15 +0,0 @@
-# Changelog
-
-All notable changes to this project will be documented in this file.
-
-The format is based on [Keep a Changelog][],
-and this project adheres to [Semantic Versioning][].
-
-[keep a changelog]: https://keepachangelog.com/en/1.0.0/
-[semantic versioning]: https://semver.org/spec/v2.0.0.html
-
-## [Unreleased]
-
-### Added
-
--   Basic tool, preprocessing and plotting functions

docs/notebooks/example.ipynb

@@ -2,15 +2,23 @@
  "cells": [
   {
    "cell_type": "markdown",
-   "metadata": {},
+   "metadata": {
+    "pycharm": {
+     "name": "#%% md\n"
+    }
+   },
    "source": [
     "# Example notebook"
    ]
   },
   {
    "cell_type": "code",
    "execution_count": 1,
-   "metadata": {},
+   "metadata": {
+    "pycharm": {
+     "name": "#%%\n"
+    }
+   },
    "outputs": [],
    "source": [
     "import numpy as np\n",
@@ -21,7 +29,11 @@
   {
    "cell_type": "code",
    "execution_count": 2,
-   "metadata": {},
+   "metadata": {
+    "pycharm": {
+     "name": "#%%\n"
+    }
+   },
    "outputs": [],
    "source": [
     "adata = AnnData(np.random.normal(size=(20, 10)))"
@@ -30,7 +42,11 @@
   {
    "cell_type": "code",
    "execution_count": 3,
-   "metadata": {},
+   "metadata": {
+    "pycharm": {
+     "name": "#%%\n"
+    }
+   },
    "outputs": [
     {
      "name": "stdout",