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all the paths used in notebooks 00_xenium_and_visium.ipynb, 01_xenium_and_visium.ipynb and 02_xenium_and_visium.ipynb should be placed in a config.py file
sandbox.zarr was a poorly chosen name, rename it to manual_annotations.zarr. I have already made a copy in the S3 bucket of that file (so that now both sandbox.zarr.zip and manual_annotations.zarr.zip are present), so one needs just to adjust the notebooks.