Merge branch 'niche_definitions' of https://github.com/scverse/squidpy into niche_definitions

LLehner · LLehner · commit 8b224090ca2f · 2024-07-16T16:03:17.000+02:00
diff --git a/src/squidpy/gr/_niche.py b/src/squidpy/gr/_niche.py
@@ -140,7 +140,7 @@ def calculate_niche(
                     f"Invalid aggregation method '{aggregation}'. Please choose either 'mean' or 'variance'."
                 )
             concatenated_matrix = hstack(inner_products)
-            
+
             # create df from sparse matrix
             arr = concatenated_matrix.toarray()
             df = pd.DataFrame(arr, index=adata.obs.index)

Original file line number	Diff line number	Diff line change
`@@ -140,7 +140,7 @@ def calculate_niche(`
`140`	`140`	`f"Invalid aggregation method '{aggregation}'. Please choose either 'mean' or 'variance'."`
`141`	`141`	`)`
`142`	`142`	`concatenated_matrix = hstack(inner_products)`
`143`		`-`
	`143`	`+`
`144`	`144`	`# create df from sparse matrix`
`145`	`145`	`arr = concatenated_matrix.toarray()`
`146`	`146`	`df = pd.DataFrame(arr, index=adata.obs.index)`