fix dependencies

Author: selmanozleyen

benchmarks/asv.conf.json

@@ -50,7 +50,7 @@
     //"install_timeout": 600,
 
     // the base URL to show a commit for the project.
-    "show_commit_url": "https://github.com/squidpy/scanpy/commit/",
+    "show_commit_url": "https://github.com/scverse/squidpy/commit/",
 
     // The Pythons you'd like to test against.  If not provided, defaults
     // to the current version of Python used to run `asv`.
@@ -74,7 +74,6 @@
         "numpy": [""],
         "scipy": [""],
         "squidpy": [""],
-        "scanpy": [""],
     },
 
     // Combinations of libraries/python versions can be excluded/included

benchmarks/benchmarks/_utils.py

@@ -6,7 +6,7 @@
 
 import numpy as np
 from asv_runner.benchmarks.mark import skip_for_params
-from scanpy._compat import CSCBase, CSRBase
+from scipy.sparse import csc_matrix, csr_matrix
 
 import squidpy as sq
 
@@ -39,8 +39,8 @@ def imc() -> AnnData:
     return _imc().copy()
 
 
-def to_off_axis(x: np.ndarray | CSRBase) -> np.ndarray | CSCBase:
-    if isinstance(x, CSRBase):
+def to_off_axis(x: np.ndarray | csr_matrix | csc_matrix) -> np.ndarray | csc_matrix:
+    if isinstance(x, csr_matrix):
         return x.tocsc()
     if isinstance(x, np.ndarray):
         assert not np.isfortran(x)