From fa052e3aafb615c3557bb43c48313e3a46ab3265 Mon Sep 17 00:00:00 2001 From: Luca Marconato Date: Tue, 23 Sep 2025 17:27:11 +0200 Subject: [PATCH] zarr v3 support --- pyproject.toml | 4 ++-- tests/conftest.py | 2 +- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index e8968966c..fde05acf3 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -70,7 +70,7 @@ dependencies = [ "tqdm>=4.50.2", "validators>=0.18.2", "xarray>=2024.10.0", - "zarr>=2.6.1,<3.0.0", + "zarr>=2.6.1", "spatialdata>=0.2.5", ] @@ -281,4 +281,4 @@ exclude_lines = [ show_missing = true precision = 2 skip_empty = true -sort = "Miss" \ No newline at end of file +sort = "Miss" diff --git a/tests/conftest.py b/tests/conftest.py index 016d20d90..c14f00892 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -376,7 +376,7 @@ def sdata_mask_graph(): "region_key": "region", "instance_key": "instance_id", } - return sd.SpatialData.from_elements_dict( + return sd.SpatialData.init_from_elements( { "circles": sd.models.ShapesModel().parse(points_df), "polygon": sd.models.ShapesModel().parse(polygon_df),