fix: resolve all linting, formatting, and type checking issues #25

	name: CI

	on:
	push:
	branches: [ main, develop ]
	pull_request:
	branches: [ main ]

	jobs:
	test:
	runs-on: ubuntu-latest
	strategy:
	matrix:
	python-version: ["3.10", "3.11", "3.12"]
	steps:
	- name: Checkout code
	uses: actions/checkout@v3

	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v4
	with:
	python-version: ${{ matrix.python-version }}

	- name: Cache pip
	uses: actions/cache@v4
	with:
	path: ~/.cache/pip
	key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements.txt') }}
	restore-keys: \|
	${{ runner.os }}-pip-

	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install -r requirements.txt
	pip install pytest pytest-cov

	- name: Run tests with coverage
	run: \|
	python -m pytest tests/ -v --cov=shellrosetta --cov-report=xml

	- name: Upload coverage to Codecov
	uses: codecov/codecov-action@v4
	with:
	token: ${{ secrets.CODECOV_TOKEN }}
	files: ./coverage.xml

	lint:
	runs-on: ubuntu-latest
	steps:
	- name: Checkout code
	uses: actions/checkout@v3

	- name: Set up Python
	uses: actions/setup-python@v4
	with:
	python-version: "3.11"

	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install flake8 black mypy
	pip install -r requirements.txt

	- name: Run flake8
	run: flake8 shellrosetta/ tests/ --max-line-length=88 --ignore=E501,W293,W291,W292,E302,E305,F401,F841

	- name: Run black
	run: black --check shellrosetta/ tests/

	- name: Run mypy
	run: mypy shellrosetta/ --ignore-missing-imports

Provide feedback