make release-tag: Merge branch 'master' into stable

Author: csala

.gitignore

@@ -67,6 +67,7 @@ docs/_build/
 docs/copulas.rst
 docs/copulas.*.rst
 docs/modules.rst
+docs/api/
 
 # PyBuilder
 target/

.travis.yml

@@ -5,35 +5,15 @@ python:
   - 3.5
 
 # Command to install dependencies
-install: pip install -U tox-travis
+install: pip install -U tox-travis codecov
 
 # Command to run tests
 script: tox
 
-deploy:
+after_success: codecov
 
-  # Automatically deploy releases to PyPI for each tagged commit
-  # Assuming you have installed the travis-ci CLI tool, after you
-  # create the Github repo and add it to Travis, run the
-  # following command to finish PyPI deployment setup:
-  # $ travis encrypt MY_PYPI_PASSWORD
-  # and then copy the (really long) encrypted password as shown.
-  # - provider: pypi
-  #   distributions: sdist bdist_wheel
-  #   user: dai_lab_mit
-  #   password:
-  #     secure: "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"
-  #   on:
-  #     tags: true
-  #     branch: stable
-  #     repo: DAI-Lab/Copulas
-  #     python: 3.6
+deploy:
 
-  # Automatically build and deploy documentation to GitHub Pages after every
-  # commit
-  # Follow the instructions at https://docs.travis-ci.com/user/deployment/pages/
-  # to setup a personal deployment token and then provide it as a secure
-  # environment variable at https://travis-ci.org/DAI-Lab/Copulas/settings
   - provider: pages
     skip-cleanup: true
     github-token: "$GITHUB_TOKEN"

AUTHORS.rst

@@ -1,11 +1,15 @@
-=======
 Credits
 =======
 
+Development Lead
+----------------
+* Kalyan Veeramachaneni <kalyan@csail.mit.edu>
+* (Alicia)Yi Sun <yis@mit.edu>
+
 Contributors
 ------------
 
+* Manuel Alvarez <manuel@pythiac.com>
+* Carles Sala <carles@pythiac.com>
 * Andrew Montanez <amontane@mit.edu>
-* (Alicia)Yi  Sun <yis@mit.edu>
-* Kalyan Veeramachaneni <kalyan@csail.mit.edu>
-* Manuel Alvarez <manuel@pythiac.com>
+* paulolimac <paulolimac@gmail.com>

HISTORY.md

@@ -1,5 +1,25 @@
 # History
 
+## 0.2.2 (2019-07-31)
+
+### New Features
+
+* `truncnorm` distribution and a generic wrapper for `scipy.rv_continous` distributions - Issue [#27](https://github.com/DAI-Lab/Copulas/issues/27) by @amontanez, @csala and @ManuelAlvarezC
+* `Independence` bivariate copulas - Issue [#46](https://github.com/DAI-Lab/Copulas/issues/46) by @aliciasun, @csala and @ManuelAlvarezC
+* Option to select seed on random number generator - Issue [#63](https://github.com/DAI-Lab/Copulas/issues/63) by @echo66 and @ManuelAlvarezC
+* Option on Vine copulas to select number of rows to sample - Issue [#77](https://github.com/DAI-Lab/Copulas/issues/77) by @ManuelAlvarezC
+* Make copulas accept both scalars and arrays as arguments - Issues [#85](https://github.com/DAI-Lab/Copulas/issues/85) and [#90](https://github.com/DAI-Lab/Copulas/issues/90) by @ManuelAlvarezC
+
+### General Improvements
+
+* Ability to properly handle constant data - Issues [#57](https://github.com/DAI-Lab/Copulas/issues/57) and [#82](https://github.com/DAI-Lab/Copulas/issues/82) by @csala and @ManuelAlvarezC
+* Tests for analytics properties of copulas - Issue [#61](https://github.com/DAI-Lab/Copulas/issues/61) by @ManuelAlvarezC
+* Improved documentation - Issue [#96](https://github.com/DAI-Lab/Copulas/issues/96) by @ManuelAlvarezC
+
+### Bugs fixed
+
+* Fix bug on Vine copulas, that made it crash during the bivariate copula selection - Issue [#64](https://github.com/DAI-Lab/Copulas/issues/64) by @echo66 and @ManuelAlvarezC
+
 ## 0.2.1 - Vine serialization
 
 * Add serialization to Vine copulas.

Makefile

@@ -49,6 +49,7 @@ clean-pyc: ## remove Python file artifacts
 
 .PHONY: clean-docs
 clean-docs: ## remove previously built docs
+	rm -f docs/api/*.rst
 	-$(MAKE) -C docs clean 2>/dev/null  # this fails if sphinx is not yet installed
 
 .PHONY: clean-coverage
@@ -88,6 +89,10 @@ lint: ## check style with flake8 and isort
 	flake8 copulas tests examples
 	isort -c --recursive copulas tests examples
 
+lint-docs: ## check docs formatting with doc8 and pydocstyle
+	doc8 . docs/
+	pydocstyle copulas/
+
 .PHONY: fix-lint
 fix-lint: ## fix lint issues using autoflake, autopep8, and isort
 	find copulas -name '*.py' | xargs autoflake --in-place --remove-all-unused-imports --remove-unused-variables
@@ -124,8 +129,8 @@ coverage: ## check code coverage quickly with the default Python
 
 .PHONY: docs
 docs: clean-docs ## generate Sphinx HTML documentation, including API docs
+	sphinx-apidoc --separate -o docs/api/ copulas
 	$(MAKE) -C docs html
-	touch docs/_build/html/.nojekyll
 
 .PHONY: view-docs
 view-docs: docs ## view docs in browser
@@ -154,7 +159,7 @@ publish: dist ## package and upload a release
 
 .PHONY: bumpversion-release
 bumpversion-release: ## Merge master to stable and bumpversion release
-	git checkout stable
+	git checkout stable || git checkout -b stable
 	git merge --no-ff master -m"make release-tag: Merge branch 'master' into stable"
 	bumpversion release
 	git push --tags origin stable
@@ -174,8 +179,8 @@ bumpversion-minor: ## Bump the version the next minor skipping the release
 bumpversion-major: ## Bump the version the next major skipping the release
 	bumpversion --no-tag major
 
-CURRENT_BRANCH := $(shell git rev-parse --abbrev-ref HEAD)
-CHANGELOG_LINES := $(shell git diff HEAD..stable HISTORY.md | wc -l)
+CURRENT_BRANCH := $(shell git rev-parse --abbrev-ref HEAD 2>/dev/null)
+CHANGELOG_LINES := $(shell git diff HEAD..origin/stable HISTORY.md 2>&1 | wc -l)
 
 .PHONY: check-release
 check-release: ## Check if the release can be made