python312Packages.optuna: 4.2.0 -> 4.2.1 (NixOS#382097)

Author: NickCao

pkgs/development/python-modules/librosa/default.nix

@@ -2,6 +2,7 @@
   lib,
   stdenv,
   buildPythonPackage,
+  pythonAtLeast,
   fetchFromGitHub,
   fetchpatch2,
 
@@ -32,12 +33,15 @@
   pytestCheckHook,
   resampy,
   samplerate,
+  writableTmpDirAsHomeHook,
 }:
 
 buildPythonPackage rec {
   pname = "librosa";
   version = "0.10.2.post1";
-  format = "pyproject";
+  pyproject = true;
+
+  disabled = pythonAtLeast "3.13";
 
   src = fetchFromGitHub {
     owner = "librosa";
@@ -94,12 +98,9 @@ buildPythonPackage rec {
     pytestCheckHook
     resampy
     samplerate
+    writableTmpDirAsHomeHook
   ] ++ optional-dependencies.matplotlib;
 
-  preCheck = ''
-    export HOME=$(mktemp -d)
-  '';
-
   disabledTests =
     [
       # requires network access
@@ -137,5 +138,10 @@ buildPythonPackage rec {
     changelog = "https://github.com/librosa/librosa/releases/tag/${version}";
     license = lib.licenses.isc;
     maintainers = with lib.maintainers; [ GuillaumeDesforges ];
+    badPlatforms = [
+      # Several non-deterministic occurances of "Fatal Python error: Segmentation fault", both in
+      # numpy's and in this package's code.
+      "aarch64-linux"
+    ];
   };
 }

pkgs/development/python-modules/optuna/default.nix

@@ -1,48 +1,56 @@
 {
   lib,
+  stdenv,
   buildPythonPackage,
   fetchFromGitHub,
-  pytestCheckHook,
-  pythonOlder,
+
+  # build-system
+  setuptools,
+
+  # dependencies
   alembic,
+  colorlog,
+  numpy,
+  packaging,
+  sqlalchemy,
+  tqdm,
+  pyyaml,
+
+  # optional-dependencies
   boto3,
   cmaes,
-  colorlog,
-  fakeredis,
   fvcore,
   google-cloud-storage,
   grpcio,
-  kaleido,
   matplotlib,
-  moto,
-  numpy,
-  packaging,
   pandas,
   plotly,
   protobuf,
-  pytest-xdist,
-  pyyaml,
   redis,
   scikit-learn,
   scipy,
-  setuptools,
-  sqlalchemy,
+
+  # tests
+  addBinToPathHook,
+  fakeredis,
+  kaleido,
+  moto,
+  pytest-xdist,
+  pytestCheckHook,
   torch,
-  tqdm,
+  versionCheckHook,
 }:
 
 buildPythonPackage rec {
   pname = "optuna";
-  version = "4.2.0";
+  version = "4.2.1";
   pyproject = true;
 
-  disabled = pythonOlder "3.8";
-
   src = fetchFromGitHub {
     owner = "optuna";
     repo = "optuna";
     tag = "v${version}";
-    hash = "sha256-NNlwrVrGg2WvkC42nmW7K/mRktE3B97GaL8GaSOKF1Y=";
+    hash = "sha256-WLrdHrdfCtCZMW2J375N8vmod7FcKCMwQPGKicRA878=";
   };
 
   build-system = [
@@ -76,40 +84,68 @@ buildPythonPackage rec {
     ];
   };
 
+  # grpc tests are racy
   preCheck = ''
-    export PATH=$out/bin:$PATH
-
-    # grpc tests are racy
     sed -i '/"grpc",/d' optuna/testing/storages.py
   '';
 
   nativeCheckInputs =
     [
+      addBinToPathHook
       fakeredis
       kaleido
       moto
       pytest-xdist
       pytestCheckHook
       torch
+      versionCheckHook
     ]
     ++ fakeredis.optional-dependencies.lua
     ++ optional-dependencies.optional;
+  versionCheckProgramArg = [ "--version" ];
 
-  disabledTests = [
-    # ValueError: Transform failed with error code 525: error creating static canvas/context for image server
-    "test_get_pareto_front_plot"
-    # too narrow time limit
-    "test_get_timeline_plot_with_killed_running_trials"
-  ];
+  disabledTests =
+    [
+      # ValueError: Transform failed with error code 525: error creating static canvas/context for image server
+      "test_get_pareto_front_plot"
+      # too narrow time limit
+      "test_get_timeline_plot_with_killed_running_trials"
+    ]
+    ++ lib.optionals stdenv.hostPlatform.isDarwin [
+      # ValueError: Failed to start Kaleido subprocess. Error stream
+      # kaleido/executable/kaleido: line 5:  5956 Illegal instruction: 4  ./bin/kaleido $@
+      "test_get_optimization_history_plot"
+      "test_plot_intermediate_values"
+      "test_plot_rank"
+      "test_plot_terminator_improvement"
+
+      # Fatal Python error: Aborted
+      # matplotlib/backend_bases.py", line 2654 in create_with_canvas
+      "test_edf_plot_no_trials"
+      "test_get_timeline_plot"
+      "test_plot_contour"
+      "test_plot_contour_customized_target_name"
+      "test_plot_edf_with_multiple_studies"
+      "test_plot_edf_with_target"
+      "test_plot_parallel_coordinate"
+      "test_plot_parallel_coordinate_customized_target_name"
+      "test_plot_param_importances"
+      "test_plot_param_importances_customized_target_name"
+      "test_plot_param_importances_multiobjective_all_objectives_displayed"
+      "test_plot_slice"
+      "test_plot_slice_customized_target_name"
+      "test_target_is_none_and_study_is_multi_obj"
+      "test_visualizations_with_single_objectives"
+    ];
 
   pythonImportsCheck = [ "optuna" ];
 
-  meta = with lib; {
+  meta = {
     description = "Hyperparameter optimization framework";
     homepage = "https://optuna.org/";
     changelog = "https://github.com/optuna/optuna/releases/tag/${version}";
-    license = licenses.mit;
-    maintainers = with maintainers; [ natsukium ];
+    license = lib.licenses.mit;
+    maintainers = with lib.maintainers; [ natsukium ];
     mainProgram = "optuna";
   };
 }