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Merge branch 'main' into docs/unhide-contributors
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‎.cz.toml‎

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[tool.commitizen]
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version = "0.16.0"
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version = "0.16.3"
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bump_message = "build(version): :bookmark: update version from $current_version to $new_version"
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version_schema = "semver"
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version_provider = "commitizen"

‎.github/CODEOWNERS‎

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# All members on Developers team get added to review PRs
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* @seedcase-project/developers
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# Ignore these so we don't get added to sync PRs
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/.github/
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/.vscode/
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/.devcontainer/
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justfile
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.editorconfig
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.gitignore
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ruff.toml
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pyproject.toml
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uv.lock

‎.github/pull_request_template.md‎

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# Description
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This PR DESCRIBE CHANGES.
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These changes EXPLANATION.
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Closes #
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This PR needs a quick/an in-depth review.
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## Checklist
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- [ ] Added or updated tests
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- [ ] Updated documentation
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- [ ] Ran `just run-all`
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- [ ] Formatted Markdown, if modified

‎.vscode/json.code-snippets‎

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{
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// Place your snippets for Quarto here.
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// Each snippet is defined under a snippet name and has a prefix, body and description.
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// The prefix is what is used to trigger the snippet and the body will be expanded and inserted.
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// Possible variables are:
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//
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// - $1 and $2 for tab stops,
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// - $0 for the final cursor position, and
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// - ${1:label}, ${2:another} for placeholders
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//
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// Placeholders with the same ids are connected.
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//
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// How to use the code snippets:
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// After you have set the above settings, a suggestion for one of the code snippets below will pop up automatically, when
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// you start writing the prefix. Press "Enter" or "Tab" to insert the code snippet.
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"Insert TODO formatting": {
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"scope": "quarto,markdown",
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"prefix": "TODO",
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],
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"description": "Insert bash formatted text"
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},
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"Insert YAML header for blogs": {
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"scope": "quarto,markdown",
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"prefix": "post_yaml",
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"body": [
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"---",
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"title: \"\"",
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"description: \"Our reasons for ...\"",
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"author: \"\"",
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"date: last-modified",
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"categories:",
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" ${0:Type 'category_keywords' to insert categories}",
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"---"
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],
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"description": "Insert YAML header for Quarto blog posts."
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},
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"Insert a hidden comment section": {
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"scope": "quarto,markdown",
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"prefix": "hidden",
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"| | | |"
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],
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"description": "Insert a 3 col table"
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},
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"Insert video": {
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"scope": "quarto,markdown",
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"prefix": "video",
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"body": [
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"{{< video ${0:Insert link here} >}}"
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],
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"description": "Insert video that will be shown"
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},
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"Insert paneltab": {
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"scope": "quarto,markdown",
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"prefix": "paneltab",
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"body": [
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"::: panel-tabset",
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"### ${0:Header}",
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"",
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"${1:Text body}",
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"",
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"### ${2:Header}",
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"",
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"${3:Text body}",
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":::"
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],
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"description": "Insert paneltab (including two tabs here). If you want additional tabs, just include more headers."
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}
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}

‎.vscode/settings.json‎

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"files.autoSave": "onFocusChange",
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"editor.wordWrap": "off",
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"editor.formatOnSave": true,
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"editor.codeActionsOnSave": {
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"source.organizeImports": "always"
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},
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"git.autofetch": false,
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"quarto.visualEditor.markdownWrap": "column",
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"quarto.visualEditor.markdownWrapColumn": 72,
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"autoDocstring.customTemplatePath": ".vscode/google-notypes.mustache",
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"editor.tabCompletion": "on",
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"editor.snippetSuggestions": "inline",
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"conventional-branch.type": [
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"build", // Changes that affect the build system or external dependencies
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"ci", // Changes to our CI configuration files and scripts
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"docs", // Documentation only changes
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"feat", // A new feature
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"fix", // A bug fix
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"refactor", // A code change that neither fixes a bug nor adds a feature
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"style", // Changes that do not affect the meaning of the code (white-space, formatting, missing semi-colons, etc)
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"test", // Adding missing tests or correcting existing tests
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"chore", // Misc things, like renaming or deleting files
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"build",
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"ci",
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"docs",
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"feat",
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"fix",
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"refactor",
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"style",
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"test",
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"chore",
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"revert",
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"perf"
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],
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"conventional-branch.format": "{Type}/{Branch}",
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"[quarto][qmd]": {
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"[quarto][qmd][jinja]": {
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"editor.formatOnSave": false
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},
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"python.defaultInterpreterPath": "${workspaceFolder}/.venv",
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"python.languageServer": "Pylance",
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"files.insertFinalNewline": true,
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"files.associations": {
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"justfile.jinja": "plaintext",
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"*.yml.jinja": "jinja-yaml",
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"*.cff.jinja": "jinja-yaml",
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"*.toml.jinja": "jinja-toml",
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"*.qmd.jinja": "jinja-md"
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},
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"files.insertFinalNewline": true
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}

‎CHANGELOG.md‎

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# Changelog
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Since we follow [Conventional
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Commits](https://decisions.seedcase-project.org/why-conventional-commits),
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we're able to automatically create a release based on the commit message
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by using
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[Commitizen](https://decisions.seedcase-project.org/why-semantic-release-with-commitizen).
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This means that releases can happen quite often, sometimes several in
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a day. It also means any individual release will not have many changes
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within it. Below is a list of releases along with what was changed
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within it.
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## 0.16.3 (2025-09-01)
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### Refactor
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- :hammer: use `--upgrade` when installing Python dependencies (#174)
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## 0.16.2 (2025-09-01)
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### Refactor
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- :wrench: add `theme` option in `_quarto.yml`, and `brand` for Seedcase (#170)
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## 0.16.1 (2025-09-01)
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### Refactor
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- :technologist: simplify the pull request template (#165)
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## 0.16.0 (2025-08-26)
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### Feat

‎CODE_OF_CONDUCT.md‎

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# Contributor Code of Conduct
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As contributors and maintainers of this project, we pledge to respect
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all people who contribute through reporting issues, posting suggestions,
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updating any material, submitting pull requests, and other activities.
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We are committed to making participation in this project a
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harassment-free experience for everyone, regardless of level of
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experience, gender, gender identity and expression, sexual orientation,
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disability, personal appearance, body size, race, ethnicity, age, or
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religion.
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Examples of unacceptable behavior by participants include the use of
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sexual language or imagery, derogatory comments or personal attacks,
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trolling, public or private harassment, insults, or other unprofessional
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conduct.
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Project maintainers have the right and responsibility to remove, edit,
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or reject comments, commits, code, wiki edits, issues, and other
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contributions that are not aligned to this Code of Conduct. Project
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maintainers who do not follow the Code of Conduct may be removed from
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the project team.
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Instances of abusive, harassing, or otherwise unacceptable behavior may
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be reported by opening an issue or contacting one or more of the project
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maintainers.
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This Code of Conduct is adapted from the Contributor Covenant
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(https://contributor-covenant.org), version 1.0.0, available at
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https://contributor-covenant.org/version/1/0/0/

‎LICENSE.md‎

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# MIT License
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Copyright (c) 2023-2025 Aarhus University
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Copyright (c) 2023-2025 template-python-package authors
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Permission is hereby granted, free of charge, to any person obtaining a copy
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of this software and associated documentation files (the "Software"), to deal

‎README.md‎

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<!-- [![DOI]()]() -->
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[![Copier](https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/copier-org/copier/master/img/badge/badge-grayscale-inverted-border-teal.json?raw=true)](https://github.com/copier-org/copier)
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[![Copier](https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/copier-org/copier/master/img/badge/badge-grayscale-inverted-border-teal.json?raw=true.svg)](https://github.com/copier-org/copier)
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[![GitHub
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License](https://img.shields.io/github/license/seedcase-project/template-python-package.svg)](https://github.com/seedcase-project/template-python-package/blob/main/LICENSE.md)
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[![GitHub
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Release](https://img.shields.io/github/v/release/seedcase-project/template-python-package.svg)](https://github.com/seedcase-project/template-python-package/releases/latest)
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[![Test](https://github.com/seedcase-project/template-python-package/actions/workflows/test.yml/badge.svg)](https://github.com/seedcase-project/template-python-package/actions/workflows/test.yml)
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[![Build
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website](https://github.com/seedcase-project/template-python-package/actions/workflows/build-website.yml/badge.svg)](https://github.com/seedcase-project/template-python-package/actions/workflows/build-website.yml)
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[![CodeQL](https://github.com/seedcase-project/template-python-package/actions/workflows/github-code-scanning/codeql/badge.svg?branch=main)](https://github.com/seedcase-project/template-python-package/actions/workflows/github-code-scanning/codeql)
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set up your development environment.
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Please note that this project is released with a [Contributor Code of
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Conduct](https://github.com/seedcase-project/.github/blob/main/CODE_OF_CONDUCT.md).
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By participating in this project you agree to abide by its terms.
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Conduct](CODE_OF_CONDUCT.md). By participating in this project you agree
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to abide by its terms.
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### Contributors
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## Licensing
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This project is licensed under the [MIT
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This project is licensed under the [MIT License](LICENSE.md).
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‎README.qmd‎

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Please note that this project is released with a [Contributor Code of
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Conduct](https://github.com/{{< meta gh.org >}}/.github/blob/main/CODE_OF_CONDUCT.md).
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By participating in this project you agree to abide by its terms.
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Conduct](CODE_OF_CONDUCT.md). By participating in this project you agree
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to abide by its terms.
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### Contributors
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{{< include /_contributors.qmd >}}
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## Licensing
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This project is licensed under the [MIT
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License](https://github.com/{{< meta gh.org >}}/{{< meta gh.repo >}}/blob/main/LICENSE.md).
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This project is licensed under the [MIT License](LICENSE.md).
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## Citing
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