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Merge branch 'main' into refactor/move-goat-counter-into-includes
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‎.cz.toml‎

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[tool.commitizen]
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version = "0.16.1"
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version = "0.16.4"
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bump_message = "build(version): :bookmark: update version from $current_version to $new_version"
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version_schema = "semver"
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version_provider = "commitizen"

‎.vscode/json.code-snippets‎

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{
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// Place your snippets for Quarto here.
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// Each snippet is defined under a snippet name and has a prefix, body and description.
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// The prefix is what is used to trigger the snippet and the body will be expanded and inserted.
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// Possible variables are:
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//
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// - $1 and $2 for tab stops,
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// - $0 for the final cursor position, and
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// - ${1:label}, ${2:another} for placeholders
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//
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// Placeholders with the same ids are connected.
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//
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// How to use the code snippets:
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// After you have set the above settings, a suggestion for one of the code snippets below will pop up automatically, when
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// you start writing the prefix. Press "Enter" or "Tab" to insert the code snippet.
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"Insert TODO formatting": {
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"scope": "quarto,markdown",
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"prefix": "TODO",
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],
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"description": "Insert bash formatted text"
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},
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"Insert YAML header for blogs": {
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"scope": "quarto,markdown",
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"prefix": "post_yaml",
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"body": [
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"---",
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"title: \"\"",
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"description: \"Our reasons for ...\"",
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"author: \"\"",
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"date: last-modified",
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"categories:",
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" ${0:Type 'category_keywords' to insert categories}",
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"---"
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],
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"description": "Insert YAML header for Quarto blog posts."
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},
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"Insert a hidden comment section": {
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"scope": "quarto,markdown",
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"prefix": "hidden",
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"| | | |"
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],
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"description": "Insert a 3 col table"
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},
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"Insert video": {
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"scope": "quarto,markdown",
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"prefix": "video",
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"body": [
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"{{< video ${0:Insert link here} >}}"
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],
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"description": "Insert video that will be shown"
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},
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"Insert paneltab": {
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"scope": "quarto,markdown",
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"prefix": "paneltab",
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"body": [
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"::: panel-tabset",
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"### ${0:Header}",
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"",
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"${1:Text body}",
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"",
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"### ${2:Header}",
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"",
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"${3:Text body}",
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":::"
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],
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"description": "Insert paneltab (including two tabs here). If you want additional tabs, just include more headers."
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}
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}

‎.vscode/settings.json‎

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"files.autoSave": "onFocusChange",
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"editor.wordWrap": "off",
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"editor.formatOnSave": true,
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"editor.codeActionsOnSave": {
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"source.organizeImports": "always"
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},
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"git.autofetch": false,
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"quarto.visualEditor.markdownWrap": "column",
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"quarto.visualEditor.markdownWrapColumn": 72,
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"autoDocstring.customTemplatePath": ".vscode/google-notypes.mustache",
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"editor.tabCompletion": "on",
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"editor.snippetSuggestions": "inline",
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"conventional-branch.type": [
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"build", // Changes that affect the build system or external dependencies
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"ci", // Changes to our CI configuration files and scripts
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"docs", // Documentation only changes
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"feat", // A new feature
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"fix", // A bug fix
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"refactor", // A code change that neither fixes a bug nor adds a feature
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"style", // Changes that do not affect the meaning of the code (white-space, formatting, missing semi-colons, etc)
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"test", // Adding missing tests or correcting existing tests
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"chore", // Misc things, like renaming or deleting files
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"build",
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"ci",
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"docs",
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"feat",
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"fix",
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"refactor",
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"style",
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"test",
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"chore",
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"revert",
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"perf"
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],
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"conventional-branch.format": "{Type}/{Branch}",
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"[quarto][qmd]": {
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"[quarto][qmd][jinja]": {
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"editor.formatOnSave": false
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},
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"python.defaultInterpreterPath": "${workspaceFolder}/.venv",
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"python.languageServer": "Pylance",
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"files.insertFinalNewline": true,
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"files.associations": {
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"justfile.jinja": "plaintext",
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"*.yml.jinja": "jinja-yaml",
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"*.cff.jinja": "jinja-yaml",
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"*.toml.jinja": "jinja-toml",
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"*.qmd.jinja": "jinja-md"
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},
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"files.insertFinalNewline": true
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}

‎CHANGELOG.md‎

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within it. Below is a list of releases along with what was changed
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within it.
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## 0.16.4 (2025-09-01)
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### Refactor
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- :pushpin: update pre-commit versions (#171)
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## 0.16.3 (2025-09-01)
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### Refactor
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- :hammer: use `--upgrade` when installing Python dependencies (#174)
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## 0.16.2 (2025-09-01)
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### Refactor
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- :wrench: add `theme` option in `_quarto.yml`, and `brand` for Seedcase (#170)
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## 0.16.1 (2025-09-01)
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### Refactor

‎README.md‎

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<!-- [![DOI]()]() -->
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7-
[![Copier](https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/copier-org/copier/master/img/badge/badge-grayscale-inverted-border-teal.json?raw=true)](https://github.com/copier-org/copier)
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[![Copier](https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/copier-org/copier/master/img/badge/badge-grayscale-inverted-border-teal.json?raw=true.svg)](https://github.com/copier-org/copier)
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[![GitHub
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License](https://img.shields.io/github/license/seedcase-project/template-python-package.svg)](https://github.com/seedcase-project/template-python-package/blob/main/LICENSE.md)
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[![GitHub
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Release](https://img.shields.io/github/v/release/seedcase-project/template-python-package.svg)](https://github.com/seedcase-project/template-python-package/releases/latest)
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[![Test](https://github.com/seedcase-project/template-python-package/actions/workflows/test.yml/badge.svg)](https://github.com/seedcase-project/template-python-package/actions/workflows/test.yml)
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[![Build
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website](https://github.com/seedcase-project/template-python-package/actions/workflows/build-website.yml/badge.svg)](https://github.com/seedcase-project/template-python-package/actions/workflows/build-website.yml)
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[![CodeQL](https://github.com/seedcase-project/template-python-package/actions/workflows/github-code-scanning/codeql/badge.svg?branch=main)](https://github.com/seedcase-project/template-python-package/actions/workflows/github-code-scanning/codeql)

‎docs/includes/_badges.qmd‎

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[![Copier](https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/copier-org/copier/master/img/badge/badge-grayscale-inverted-border-teal.json?raw=true.svg)](https://github.com/copier-org/copier)
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[![GitHub License](https://img.shields.io/github/license/{{< meta gh.org >}}/{{< meta gh.repo >}}.svg)](https://github.com/{{< meta gh.org >}}/{{< meta gh.repo >}}/blob/main/LICENSE.md)
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[![GitHub Release](https://img.shields.io/github/v/release/{{< meta gh.org >}}/{{< meta gh.repo >}}.svg)](https://github.com/{{< meta gh.org >}}/{{< meta gh.repo >}}/releases/latest)
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[![Test](https://github.com/{{< meta gh.org >}}/{{< meta gh.repo >}}/actions/workflows/test.yml/badge.svg)](https://github.com/{{< meta gh.org >}}/{{< meta gh.repo >}}/actions/workflows/test.yml)
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[![Build website](https://github.com/{{< meta gh.org >}}/{{< meta gh.repo >}}/actions/workflows/build-website.yml/badge.svg)](https://github.com/{{< meta gh.org >}}/{{< meta gh.repo >}}/actions/workflows/build-website.yml)
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[![CodeQL](https://github.com/{{< meta gh.org >}}/{{< meta gh.repo >}}/actions/workflows/github-code-scanning/codeql/badge.svg?branch=main)](https://github.com/{{< meta gh.org >}}/{{< meta gh.repo >}}/actions/workflows/github-code-scanning/codeql)
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[![pre-commit.ci status](https://results.pre-commit.ci/badge/github/{{< meta gh.org >}}/{{< meta gh.repo >}}/main.svg)](https://results.pre-commit.ci/latest/github/{{< meta gh.org >}}/{{< meta gh.repo >}}/main)

‎template/.pre-commit-config.yaml‎

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- id: gitleaks
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- repo: https://github.com/pre-commit/pre-commit-hooks
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rev: v5.0.0
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rev: v6.0.0
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hooks:
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- id: trailing-whitespace
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- id: end-of-file-fixer
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# sub-packages, which confuses pre-commit when it tries to find the latest
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# version
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- repo: https://github.com/adhtruong/mirrors-typos
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rev: v1.34.0
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rev: v1.35.5
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hooks:
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- id: typos

‎template/_quarto.yml.jinja‎

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project:
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# TODO: change to extension name if using a custom extension
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type: website
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# Delete auto-generated files from `quartodoc`
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post-render: rm -f docs/reference/*.qmd
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- docs/reference/_sidebar.yml
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format:
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{{ "seedcase-theme-html" if is_seedcase_project else "html" }}:
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include-before-body:
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- "docs/includes/site-counter.html"
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{% if is_seedcase_project -%}
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seedcase-theme-html:
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theme:
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- brand
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{%- else -%}
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# TODO: Use Quarto extension if available
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html:
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theme:
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# TODO: Choose a different theme if desired
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- litera
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{%- endif %}
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# TODO: Uncomment if using the goatcounter website visitor counter
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# include-before-body:
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# - "docs/includes/site-counter.html"
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editor:
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markdown:

‎template/justfile.jinja‎

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uvx pre-commit run --all-files
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# Update versions of pre-commit hooks
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uvx pre-commit autoupdate
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{% if is_seedcase_project %}
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{%- if is_seedcase_project %}
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# Update the Quarto seedcase-theme extension
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update-quarto-theme:
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quarto add seedcase-project/seedcase-theme --no-prompt
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{% endif %}
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{%- endif %}
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# Install Python package dependencies
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install-deps:
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uv sync --all-extras --dev
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uv sync --all-extras --dev --upgrade
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# Run the Python tests
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test-python:

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