initialise.yml

# SPDX-FileCopyrightText: 2006-2025 Knut Reinert & Freie Universität Berlin
# SPDX-FileCopyrightText: 2016-2025 Knut Reinert & MPI für molekulare Genetik
# SPDX-License-Identifier: CC0-1.0

name: Initialise

on:
  push:
    branches:
      - main
  workflow_dispatch:

env:
  TZ: Europe/Berlin

defaults:
  run:
    shell: bash -Eeuxo pipefail {0}

jobs:
  init:
    runs-on: ubuntu-latest
    if: github.event_name == 'workflow_dispatch' || (github.event.repository.name != 'app-template' && github.event.created)
    name: Initialise
    permissions:
      contents: write
    steps:
      - name: Checkout
        uses: actions/checkout@v6

      - name: Initialise
        run: |
          for file in $(git grep -l '${PROJECT_NAME}'); do sed -i 's/${PROJECT_NAME}/${{ github.event.repository.name }}/g' "${file}"; done
          for file in $(git grep -l 'seqan/app-template'); do sed -i 's@seqan/app-template@${{ github.repository }}@g' "${file}"; done
          for file in $(git grep -l 'app-template'); do sed -i 's/app-template/${{ github.event.repository.name }}/g' "${file}"; done

          sed -i 's/# SeqAn App Template/# ${{ github.event.repository.name }}/' README.md
          sed -i 's/App-Template%20CI/${{ github.event.repository.name }}%20CI/g' README.md
          sed -i 's@https://app.codecov.io/gh/seqan@https://app.codecov.io/gh/${{ github.repository_owner }}@g' README.md
          sed -i '/<!-- InitDelete -->/,/<!-- DeleteInit -->/d' README.md

          git checkout test/data/datasources.cmake
          git checkout .github/workflows/*
          rm .github/workflows/initialise.yml
          rm .github/workflows/ci_cpm.yml

      - name: Commit changes
        uses: EndBug/add-and-commit@v10
        with:
          message: 'Initialise repository'