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Merge pull request #268 from eseiler/infra/package
[INFRA] Packaging
2 parents 4f6bc1b + 58c7911 commit 6e90be6

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15 files changed

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15 files changed

+167
-62
lines changed

‎.github/workflows/ci_coverage.yml‎

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@@ -54,18 +54,18 @@ jobs:
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mkdir build
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cd build
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cmake ../test/coverage -DCMAKE_BUILD_TYPE=Coverage
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make -j gtest_main
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make gtest_main
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- name: Build tests
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working-directory: build
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run: |
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ccache -z
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make -k -j
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make -k
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ccache -sv
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- name: Run tests
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working-directory: build
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run: ctest . -j --output-on-failure
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run: ctest . -j --output-on-failure --no-tests=error
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- name: Generate coverage report
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run: |

‎.github/workflows/ci_documentation.yml‎

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@@ -54,7 +54,7 @@ jobs:
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- name: Run tests
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working-directory: build
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run: ctest . -j --output-on-failure
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run: ctest . -j --output-on-failure --no-tests=error
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- name: Deploy Preview
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if: github.event_name == 'pull_request_target'

‎.github/workflows/ci_install.yaml‎

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# SPDX-FileCopyrightText: 2006-2025, Knut Reinert & Freie Universität Berlin
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# SPDX-FileCopyrightText: 2016-2025, Knut Reinert & MPI für molekulare Genetik
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# SPDX-License-Identifier: CC0-1.0
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name: Install
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on:
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push:
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branches:
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- 'main'
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pull_request:
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types:
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- unlabeled
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workflow_dispatch:
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concurrency:
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group: install-${{ github.event.pull_request.number || github.ref }}
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cancel-in-progress: ${{ github.event_name != 'push' }}
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env:
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TZ: Europe/Berlin
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CPM_USE_LOCAL_PACKAGES: ON
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CPM_LOCAL_PACKAGES_ONLY: ON
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defaults:
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run:
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shell: bash -Eexuo pipefail {0}
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jobs:
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build:
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runs-on: ubuntu-latest
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name: gcc-14
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if: github.repository_owner == 'seqan' || github.event_name == 'workflow_dispatch' || github.event.label.name == 'lint'
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container:
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image: ghcr.io/seqan/gcc-14
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volumes:
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- /home/runner:/home/runner
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steps:
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- name: Checkout
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uses: actions/checkout@v4
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- name: Install dependencies
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run: |
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apt-get update 1>/dev/null
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apt-get install --yes --no-install-recommends \
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libcereal-dev \
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libgtest-dev \
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libsimde-dev \
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pkgconf \
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1>/dev/null
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- name: Install hibf
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run: |
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mkdir build_install && cd build_install
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cmake .. -DCMAKE_BUILD_TYPE=Release
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make install
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make package_source
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cpack
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- name: Configure post-install tests
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run: |
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mkdir build && cd build
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cmake ../test/unit -DCMAKE_BUILD_TYPE=Release -DHIBF_POST_INSTALL_TEST=ON
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- name: Build tests
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working-directory: build
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run: make -k
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- name: Run tests
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working-directory: build
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run: ctest . -j
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‎.github/workflows/ci_linux.yml‎

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run: |
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mkdir build && cd build
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cmake ../test/unit -DCMAKE_BUILD_TYPE=Release
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make -j gtest_main
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make gtest_main
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- name: Build tests
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working-directory: build
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run: |
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ccache -z
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make -k -j
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make -k
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ccache -sv
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- name: Run tests
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working-directory: build
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run: ctest . -j --output-on-failure
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run: ctest . -j --output-on-failure --no-tests=error
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‎.github/workflows/ci_macos.yml‎

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@@ -54,15 +54,15 @@ jobs:
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mkdir build
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cd build
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cmake ../test/unit -DCMAKE_BUILD_TYPE=Release
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make -j gtest_main
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make gtest_main
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- name: Build tests
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working-directory: build
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run: |
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ccache -z
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make -k -j
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make -k
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ccache -sv
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- name: Run tests
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working-directory: build
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run: ctest . -j --output-on-failure
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run: ctest . -j --output-on-failure --no-tests=error

‎.github/workflows/ci_misc.yml‎

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@@ -108,28 +108,28 @@ jobs:
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-DHIBF_USE_INCLUDE_DEPENDENCIES="${{ matrix.use_include_dependencies }}" \
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-DCMAKE_DEPENDS_USE_COMPILER=OFF
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case "${{ matrix.build }}" in
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unit) make -j gtest_main;;
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snippet) make -j gtest_main;;
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performance) make -j benchmark_main;;
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header) make -j gtest_main benchmark_main;;
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unit) make gtest_main;;
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snippet) make gtest_main;;
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performance) make benchmark_main;;
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header) make gtest_main benchmark_main;;
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esac
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- name: Check cyclic includes
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if: matrix.use_include_dependencies == 'ON'
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working-directory: build
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run: |
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make -k -j all_dependencies
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make -k all_dependencies
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cmake .
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- name: Build tests
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if: matrix.use_include_dependencies == 'OFF'
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working-directory: build
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run: |
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ccache -z
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make -k -j
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make -k
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ccache -sv
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- name: Run tests
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if: matrix.use_include_dependencies == 'OFF'
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working-directory: build
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run: ctest . -j --output-on-failure
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run: ctest . -j --output-on-failure --no-tests=error

‎.github/workflows/ci_sanitizer.yml‎

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mkdir build && cd build
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cmake ../test/all -DCMAKE_BUILD_TYPE=${{ matrix.build_type }} \
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-DCMAKE_CXX_FLAGS="${{ matrix.cxx_flags }}"
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make -j gtest_main benchmark_main
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make gtest_main benchmark_main
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- name: Build tests
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working-directory: build
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run: make -k -j
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run: make -k
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- name: Run tests
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working-directory: build
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run: ctest . -j --output-on-failure ${{ matrix.ctest_excludes }}
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run: ctest . -j --output-on-failure --no-tests=error ${{ matrix.ctest_excludes }}
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‎.github/workflows/ci_util.yml‎

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working-directory: build
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run: |
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ccache -z
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make -k -j
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make -k
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ccache -sv
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‎cmake/cpack.cmake‎

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@@ -17,12 +17,11 @@ set (CPACK_RESOURCE_FILE_README "${HIBF_SOURCE_DIR}/README.md")
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# Source Package
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set (CPACK_SOURCE_GENERATOR "TXZ")
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list (APPEND CPACK_SOURCE_IGNORE_FILES "/\.git($|/)")
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list (APPEND CPACK_SOURCE_IGNORE_FILES "/\.github/")
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list (APPEND CPACK_SOURCE_IGNORE_FILES "/\.vscode/")
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list (APPEND CPACK_SOURCE_IGNORE_FILES "/build/")
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list (APPEND CPACK_SOURCE_IGNORE_FILES "/submodules/")
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list (APPEND CPACK_SOURCE_IGNORE_FILES "/cmake/CPM.cmake")
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list (APPEND CPACK_SOURCE_IGNORE_FILES "${HIBF_SOURCE_DIR}/\.git($|/)")
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list (APPEND CPACK_SOURCE_IGNORE_FILES "${HIBF_SOURCE_DIR}/\.github/")
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list (APPEND CPACK_SOURCE_IGNORE_FILES "${HIBF_SOURCE_DIR}/\.vscode/")
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list (APPEND CPACK_SOURCE_IGNORE_FILES "${HIBF_SOURCE_DIR}/build/")
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list (APPEND CPACK_SOURCE_IGNORE_FILES "${HIBF_SOURCE_DIR}/cmake/CPM.cmake")
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# Already being called on source package
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if (NOT CPM_DOWNLOAD_LOCATION)

‎cmake/install.cmake‎

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@@ -40,5 +40,6 @@ write_basic_package_version_file (
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COMPATIBILITY SameMajorVersion)
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install (FILES ${version_file} DESTINATION ${CMAKE_INSTALL_LIBDIR}/cmake/hibf)
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install (FILES "${HIBF_SOURCE_DIR}/LICENSE.md" "${HIBF_SOURCE_DIR}/README.md" TYPE DOC)
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install (DIRECTORY "${HIBF_SOURCE_DIR}/LICENSES" TYPE DOC)
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install (FILES "${HIBF_SOURCE_DIR}/LICENSE.md" "${HIBF_SOURCE_DIR}/README.md"
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DESTINATION ${CMAKE_INSTALL_DATAROOTDIR}/doc/hibf)
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install (DIRECTORY "${HIBF_SOURCE_DIR}/LICENSES" DESTINATION ${CMAKE_INSTALL_DATAROOTDIR}/doc/hibf)

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