Bump actions/checkout from 4 to 5

Bumps [actions/checkout](https://github.com/actions/checkout) from 4 to 5.
- [Release notes](https://github.com/actions/checkout/releases)
- [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md)
- [Commits](actions/checkout@v4...v5)

---
updated-dependencies:
- dependency-name: actions/checkout
  dependency-version: '5'
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>

Author: dependabot[bot]

.github/workflows/ci_coverage.yml

@@ -37,7 +37,7 @@ jobs:
       image: ghcr.io/seqan/${{ matrix.compiler }}
     steps:
       - name: Checkout
-        uses: actions/checkout@v4
+        uses: actions/checkout@v5
         with:
           fetch-depth: 0
 

.github/workflows/ci_documentation.yml

@@ -33,12 +33,12 @@ jobs:
     steps:
       - name: Checkout
         if: github.event_name != 'pull_request_target'
-        uses: actions/checkout@v4
+        uses: actions/checkout@v5
 
       # pull_request_target does not checkout the merge commit by default
       - name: Checkout
         if: github.event_name == 'pull_request_target'
-        uses: actions/checkout@v4
+        uses: actions/checkout@v5
         with:
           ref: "refs/pull/${{ github.event.number }}/merge"
 

.github/workflows/ci_install.yml

@@ -35,7 +35,7 @@ jobs:
       image: ghcr.io/seqan/gcc-latest
     steps:
       - name: Checkout
-        uses: actions/checkout@v4
+        uses: actions/checkout@v5
 
       - name: Install dependencies
         run: |

.github/workflows/ci_license.yml

@@ -27,7 +27,7 @@ jobs:
     if: github.repository_owner == 'seqan' || github.event_name == 'workflow_dispatch' || github.event.label.name == 'lint'
     steps:
       - name: Checkout
-        uses: actions/checkout@v4
+        uses: actions/checkout@v5
 
       - name: REUSE Compliance Check
         uses: fsfe/reuse-action@v5

.github/workflows/ci_linux.yml

@@ -37,7 +37,7 @@ jobs:
       image: ghcr.io/seqan/${{ matrix.compiler }}
     steps:
       - name: Checkout
-        uses: actions/checkout@v4
+        uses: actions/checkout@v5
 
       - name: Setup cache
         uses: seqan/actions/setup-actions-cache@main

.github/workflows/ci_macos.yml

@@ -35,7 +35,7 @@ jobs:
         compiler: ["clang-latest", "clang-second-latest", "clang-third-latest", "gcc-latest", "gcc-second-latest", "gcc-third-latest"]
     steps:
       - name: Checkout
-        uses: actions/checkout@v4
+        uses: actions/checkout@v5
 
       - name: Setup toolchain
         uses: seqan/actions/setup-toolchain@main

.github/workflows/ci_misc.yml

@@ -44,7 +44,7 @@ jobs:
       image: ghcr.io/seqan/${{ matrix.compiler }}
     steps:
       - name: Checkout
-        uses: actions/checkout@v4
+        uses: actions/checkout@v5
 
       - name: Setup cache
         uses: seqan/actions/setup-actions-cache@main

.github/workflows/ci_util.yml

@@ -37,7 +37,7 @@ jobs:
       image: ghcr.io/seqan/${{ matrix.compiler }}
     steps:
       - name: Checkout
-        uses: actions/checkout@v4
+        uses: actions/checkout@v5
 
       - name: Configure util
         run: |

.github/workflows/cron_codeql.yml

@@ -32,7 +32,7 @@ jobs:
       image: ghcr.io/seqan/gcc-second-latest
     steps:
     - name: Checkout
-      uses: actions/checkout@v4
+      uses: actions/checkout@v5
 
     - name: Initialize CodeQL
       uses: github/codeql-action/init@v3

.github/workflows/cron_sanitizer.yml

@@ -79,7 +79,7 @@ jobs:
       image: ${{ matrix.image || '' }}
     steps:
       - name: Checkout
-        uses: actions/checkout@v4
+        uses: actions/checkout@v5
 
       - name: Setup compiler
         if: contains(matrix.os, 'macos')