Merge pull request #265 from seqan/actions/iwyu

[MISC] IWYU

Author: eseiler

include/hibf/build/compute_kmers.hpp

@@ -9,7 +9,7 @@
 
 #pragma once
 
-#include <cinttypes> // for uint64_t
+#include <cstdint> // for uint64_t
 
 #include <hibf/build/build_data.hpp>   // for build_data
 #include <hibf/contrib/robin_hood.hpp> // for unordered_flat_set

include/hibf/build/construct_ibf.hpp

@@ -4,13 +4,13 @@
 
 #pragma once
 
-#include <cinttypes> // for uint64_t
-#include <cstddef>   // for size_t
+#include <cstddef> // for size_t
+#include <cstdint> // for uint64_t
 
 #include <hibf/build/build_data.hpp>         // for build_data
 #include <hibf/contrib/robin_hood.hpp>       // for unordered_flat_set
 #include <hibf/interleaved_bloom_filter.hpp> // for interleaved_bloom_filter
-#include <hibf/layout/graph.hpp>
+#include <hibf/layout/graph.hpp>             // for graph
 
 namespace seqan::hibf::build
 {

include/hibf/build/insert_into_ibf.hpp

@@ -4,14 +4,14 @@
 
 #pragma once
 
-#include <cinttypes> // for uint64_t
-#include <cstddef>   // for size_t
+#include <cstddef> // for size_t
+#include <cstdint> // for uint64_t
 
 #include <hibf/build/build_data.hpp>         // for build_data
 #include <hibf/contrib/robin_hood.hpp>       // for unordered_flat_set
 #include <hibf/interleaved_bloom_filter.hpp> // for interleaved_bloom_filter
 #include <hibf/layout/layout.hpp>            // for layout
-#include <hibf/misc/timer.hpp>               // for concurrent, timer
+#include <hibf/misc/timer.hpp>               // for concurrent_timer
 
 namespace seqan::hibf::build
 {

include/hibf/build/update_parent_kmers.hpp

@@ -8,7 +8,7 @@
  */
 #pragma once
 
-#include <cinttypes>  // for uint64_t
+#include <cstdint>    // for uint64_t
 #include <functional> // for equal_to
 
 #include <hibf/contrib/robin_hood.hpp> // for unordered_flat_set, hash

include/hibf/build/update_user_bins.hpp

@@ -5,7 +5,7 @@
 #pragma once
 
 #include <algorithm> // for fill_n
-#include <cinttypes> // for int64_t
+#include <cstdint>   // for uint64_t
 #include <vector>    // for vector
 
 #include <hibf/layout/layout.hpp> // for layout

include/hibf/cereal/concepts.hpp

@@ -4,8 +4,10 @@
 
 #pragma once
 
-#include <cereal/details/helpers.hpp> // for InputArchiveBase, OutputArchiveBase
-#include <cereal/details/traits.hpp>  // for InputArchiveBase, OutputArchiveBase
+#include <type_traits> // for is_base_of_v
+
+#include <cereal/details/helpers.hpp> // for OutputArchiveBase, InputArchiveBase, BinaryInputArchive, BinaryOutputA...
+#include <cereal/details/traits.hpp>  // for TextArchive
 
 #include <hibf/platform.hpp>
 

include/hibf/config.hpp

@@ -4,8 +4,8 @@
 
 #pragma once
 
-#include <cinttypes>  // for uint32_t, uint8_t
 #include <cstddef>    // for size_t
+#include <cstdint>    // for uint32_t, uint8_t
 #include <functional> // for function
 #include <iosfwd>     // for istream, ostream
 

include/hibf/hierarchical_interleaved_bloom_filter.hpp

@@ -6,9 +6,9 @@
 
 #include <algorithm> // for __fn, fill, sort
 #include <cassert>   // for assert
-#include <cinttypes> // for uint64_t, uint16_t, uint32_t
 #include <concepts>  // for integral, unsigned_integral
 #include <cstddef>   // for size_t
+#include <cstdint>   // for uint64_t, uint16_t, uint32_t
 #include <limits>    // for numeric_limits
 #include <memory>    // for addressof
 #include <ranges>    // for forward_range, range_value_t, range

include/hibf/interleaved_bloom_filter.hpp

@@ -12,8 +12,8 @@
 #include <algorithm>   // for fill
 #include <array>       // for array
 #include <cassert>     // for assert
-#include <cinttypes>   // for uint32_t, uint16_t, uint64_t
 #include <concepts>    // for integral, same_as, unsigned_integral
+#include <cstdint>     // for uint32_t, uint16_t, uint64_t
 #include <cstring>     // for size_t
 #include <memory>      // for addressof
 #include <ranges>      // for range, range_reference_t, range_value_t, forward_range, input_...

include/hibf/layout/data_store.hpp

@@ -4,12 +4,12 @@
 
 #pragma once
 
-#include <cassert>   // for assert
-#include <cinttypes> // for uint64_t
-#include <cstddef>   // for size_t
-#include <numeric>   // for iota
-#include <string>    // for string
-#include <vector>    // for vector
+#include <cassert> // for assert
+#include <cstddef> // for size_t
+#include <cstdint> // for uint64_t
+#include <numeric> // for iota
+#include <string>  // for basic_string, string
+#include <vector>  // for vector
 
 #include <hibf/layout/layout.hpp>      // for layout
 #include <hibf/misc/timer.hpp>         // for concurrent_timer