Commit 7a5dc83
1 file changed
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lines changedSubmodule seqan updated 42 files
- CONTRIBUTING.rst+1-1
- apps/bs_tools/tests/run_tests.py+4-2
- apps/fiona/index_qgram_parallel.h+22-22
- apps/razers3/razers_match_filter.h+4-4
- include/seqan/align/global_alignment_myers_hirschberg_impl.h-1
- include/seqan/arg_parse.h+4
- include/seqan/arg_parse/arg_parse_doc.h+54-2
- include/seqan/basic/basic_simd_vector.h+18-19
- include/seqan/file/file_page.h+21-21
- include/seqan/file/string_external.h+100-100
- include/seqan/graph_algorithms.h+2
- include/seqan/graph_algorithms/depth_first_search.h+63-38
- include/seqan/graph_algorithms/strongly_connected_compnents.h+29
- include/seqan/graph_msa/graph_align_tcoffee_io.h+1-1
- include/seqan/graph_msa/graph_align_tcoffee_library.h+41-30
- include/seqan/index/index_bidirectional.h+19-22
- include/seqan/index/index_bidirectional_stree.h+124-29
- include/seqan/index/index_bifm.h+2
- include/seqan/index/index_bifm_stree.h+2-2
- include/seqan/journaled_set/score_biaffine.h+23-8
- include/seqan/seeds/banded_chain_alignment_impl.h+18-1
- include/seqan/stream/file_stream.h+12-12
- include/seqan/stream/formatted_file.h+20
- include/seqan/stream/stream_base.h+4-5
- include/seqan/tabix_io/tabix_index_tbi.h+3
- manual/source/Infrastructure/Use/CustomBuildSystem.rst+4
- manual/source/Infrastructure/Use/Install.rst+22-22
- manual/source/index.rst+1-1
- tests/bam_io/test_bam_file.h+42
- tests/bam_io/test_bam_io.cpp+4
- tests/bed_io/test_bed_io.cpp+42
- tests/gff_io/test_gff_io.cpp+4
- tests/gff_io/test_gff_io.h+38
- tests/graph_msa/test_graph_tcoffee.h+1-1
- tests/index/test_index_bifm.cpp+36-22
- tests/roi_io/test_roi_io.cpp+42
- tests/seeds/test_align_banded_chain_impl.cpp+18
- tests/seq_io/test_seq_io.cpp+4
- tests/seq_io/test_sequence_file.h+42
- tests/vcf_io/test_vcf_io.cpp+3
- tests/vcf_io/test_vcf_io.h+38
- util/cmake/FindSeqAn.cmake+18-4
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