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- ISSUE_TEMPLATE
- config
- workflows
- scripts
- cmake
- doc
- about
- api
- citing
- customisation
- cookbook
- fragments
- howto
- porting
- subcommand_argument_parser
- use_cereal
- write_a_view
- write_an_alphabet
- setup
- library_tests
- quickstart_cmake
- tutorial
- 01_introduction
- 02_argument_parser
- 03_concepts
- 04_alphabet
- 05_ranges
- 06_minimisers
- 07_sequence_file
- 08_pairwise_alignment
- 09_search
- 10_sam_file
- 11_read_mapper
- include/seqan3
- alignment
- aligned_sequence
- cigar_conversion
- configuration
- decorator
- detail
- matrix
- detail
- pairwise
- detail
- policy
- scoring
- detail
- alphabet
- adaptation
- aminoacid
- cigar
- exposition_only
- composite
- container
- detail
- gap
- mask
- nucleotide
- quality
- range
- structure
- views
- argument_parser
- detail
- contrib
- parallel
- std
- detail
- stream
- core
- algorithm
- detail
- concept
- configuration
- detail
- debug_stream
- detail
- detail
- range
- detail
- io
- detail
- sam_file
- detail
- sequence_file
- stream
- detail
- structure_file
- views
- detail
- search
- configuration
- detail
- dream_index
- fm_index
- detail
- kmer_index
- views
- std
- utility
- bloom_filter
- char_operations
- container
- detail
- parallel
- detail
- range
- simd
- detail
- views
- tuple
- type_list
- detail
- type_pack
- detail
- type_traits
- detail
- views
- detail
- test
- analyse
- api_stability
- 3.0.2
- 3.0.3
- 3.1.0
- 3.2.0
- 3.3.0
- cmake
- diagnostics
- include_dependencies
- coverage
- documentation
- doc_dev
- doc_usr
- external_project
- seqan3_fetch_content_zip
- seqan3_installed
- seqan3_setup_tutorial_with_sharg_installed
- seqan3_setup_tutorial_with_sharg
- seqan3_setup_tutorial
- seqan3_submodule_add_subdirectory
- seqan3_submodule_find_package
- src
- header
- include/seqan3/test
- alignment
- fixture/io
- sam_file
- sequence_file
- literal
- performance
- range
- snippet
- macro_benchmark
- example
- performance
- alignment
- alphabet
- views
- example
- io
- detail
- range
- views
- search
- dream_index
- views
- std
- utility
- bloom_filter
- char_operations
- simd
- views
- scripts
- snippet
- alignment
- cigar_conversion
- configuration
- matrix/detail
- pairwise
- scoring
- alphabet
- aminoacid
- cigar
- composite
- container
- gap
- mask
- nucleotide
- quality
- structure
- views
- argument_parser
- core
- configuration
- detail
- io
- detail
- sam_file
- sam_tag_dictionary
- sequence_file
- structure_file
- views
- detail
- range
- detail
- views
- release
- search
- dream_index
- kmer_index
- views
- std/view
- test
- utility
- bloom_filter
- char_operations
- container
- detail
- simd
- detail
- views
- tuple
- type_list
- detail
- type_pack
- detail
- type_traits
- views
- unit
- alignment
- aligned_sequence
- cigar_conversion
- configuration
- decorator
- detail
- matrix
- detail
- edit_distance_matrix
- pairwise
- detail
- edit_distance
- fixture
- policy
- scoring
- detail
- alphabet
- adaptation
- aminoacid
- cigar
- exposition_only
- composite
- container
- detail
- gap
- mask
- nucleotide
- quality
- range
- structure
- views
- argument_parser
- detail
- contrib
- parallel
- stream
- core
- algorithm
- detail
- concept
- configuration
- detail
- range
- detail
- io
- detail
- sam_file
- sequence_file
- stream
- detail
- structure_file
- views
- detail
- range
- search
- configuration
- dream_index
- fm_index_cursor
- fm_index
- kmer_index
- views
- std
- test
- utility
- bloom_filter
- char_operations
- container
- detail
- parallel
- detail
- range
- simd
- detail
- views
- tuple
- type_list
- detail
- type_pack
- detail
- type_traits
- detail
- views
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