[INFRA] Use CPM

Author: eseiler

.cmake-format.yaml

@@ -41,6 +41,83 @@ parse:
       pargs: 1
       kwargs:
         CYCLIC_DEPENDING_INCLUDES: '+'
+    cpmaddpackage:
+      pargs:
+        nargs: '*'
+        flags: []
+      spelling: CPMAddPackage
+      kwargs: &cpmaddpackagekwargs
+        NAME: 1
+        FORCE: 1
+        VERSION: 1
+        GIT_TAG: 1
+        DOWNLOAD_ONLY: 1
+        GITHUB_REPOSITORY: 1
+        GITLAB_REPOSITORY: 1
+        GIT_REPOSITORY: 1
+        SVN_REPOSITORY: 1
+        SVN_REVISION: 1
+        SOURCE_DIR: 1
+        DOWNLOAD_COMMAND: 1
+        FIND_PACKAGE_ARGUMENTS: 1
+        NO_CACHE: 1
+        GIT_SHALLOW: 1
+        URL: 1
+        URL_HASH: 1
+        URL_MD5: 1
+        DOWNLOAD_NAME: 1
+        DOWNLOAD_NO_EXTRACT: 1
+        HTTP_USERNAME: 1
+        HTTP_PASSWORD: 1
+        EXCLUDE_FROM_ALL: 1
+        SYSTEM: 1
+        SOURCE_SUBDIR: 1
+        QUIET: 1
+        PATCHES: +
+        OPTIONS: +
+    cpmfindpackage:
+      pargs:
+        nargs: '*'
+        flags: []
+      spelling: CPMFindPackage
+      kwargs: *cpmaddpackagekwargs
+    cpmdeclarepackage:
+      pargs:
+        nargs: '*'
+        flags: []
+      spelling: CPMDeclarePackage
+      kwargs: *cpmaddpackagekwargs
+    packageproject:
+      pargs:
+        nargs: '*'
+        flags: []
+      spelling: packageProject
+      kwargs:
+        NAME: 1
+        VERSION: 1
+        NAMESPACE: 1
+        INCLUDE_DIR: 1
+        INCLUDE_DESTINATION: 1
+        INCLUDE_HEADER_PATTERN: 1
+        BINARY_DIR: 1
+        COMPATIBILITY: 1
+        VERSION_HEADER: 1
+        EXPORT_HEADER: 1
+        DISABLE_VERSION_SUFFIX: 1
+        CPACK: 1
+        DEPENDENCIES: +
+    cpmgetpackage:
+      pargs: 1
+      spelling: CPMGetPackage
+    cpmusepackagelock:
+      pargs: 1
+      spelling: CPMUsePackageLock
+    cpmregisterpackage:
+      pargs: 1
+      spelling: CPMRegisterPackage
+    cpmgetpackageversion:
+      pargs: 2
+      spelling: CPMGetPackageVersion
   _help_override_spec:
   - Override configurations per-command where available
   override_spec: {}

.github/workflows/ci_coverage.yml

@@ -61,7 +61,7 @@ jobs:
         run: |
           mkdir build && cd build
           cmake ../test/coverage -DCMAKE_BUILD_TYPE=Coverage
-          make gtest_build yaml-cpp
+          make gtest_main yaml-cpp
 
       - name: Build tests
         working-directory: build

.github/workflows/ci_cpm.yml

@@ -0,0 +1,32 @@
+# SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin
+# SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik
+# SPDX-License-Identifier: CC0-1.0
+
+name: Update CPM
+
+on:
+  schedule:
+    - cron: "0 12 * * SAT"
+  workflow_dispatch:
+
+env:
+  TZ: Europe/Berlin
+
+concurrency:
+  group: update-cpm-actions
+  cancel-in-progress: true
+
+jobs:
+  update_cpm:
+    name: Update CPM
+    runs-on: ubuntu-latest
+    timeout-minutes: 15
+    if: github.repository_owner == 'seqan' || github.event_name == 'workflow_dispatch'
+    steps:
+      - name: Run update CPM
+        uses: seqan/actions/update_cpm_package_lock@main
+        with:
+          token: ${{ secrets.SEQAN_ACTIONS_PAT }}
+          gpg_key: ${{ secrets.SEQAN_ACTIONS_GPG_KEY }}
+          gpg_passphrase: ${{ secrets.SEQAN_ACTIONS_GPG_PASSPHRASE }}
+          package_lock_file: cmake/package-lock.cmake

.github/workflows/ci_linux.yml

@@ -63,7 +63,7 @@ jobs:
           mkdir build && cd build
           cmake ../test/unit -DCMAKE_BUILD_TYPE=Release \
                              -DCMAKE_CXX_FLAGS="${{ matrix.cxx_flags }}"
-          make gtest_build yaml-cpp
+          make gtest_main yaml-cpp
 
       - name: Build tests
         working-directory: build

.github/workflows/ci_misc.yml

@@ -62,7 +62,7 @@ jobs:
           mkdir build && cd build
           cmake ../test/${{ matrix.build }} -DCMAKE_BUILD_TYPE=Release \
                                             -DCMAKE_CXX_FLAGS="${{ matrix.cxx_flags }}"
-          make gtest_build yaml-cpp
+          make gtest_main yaml-cpp
 
       - name: Build tests
         working-directory: build

cmake/CPM.cmake

@@ -0,0 +1,22 @@
+# SPDX-License-Identifier: MIT
+#
+# SPDX-FileCopyrightText: Copyright (c) 2019-2023 Lars Melchior and contributors
+
+set (CPM_DOWNLOAD_VERSION 0.40.2)
+set (CPM_HASH_SUM "c8cdc32c03816538ce22781ed72964dc864b2a34a310d3b7104812a5ca2d835d")
+
+if (CPM_SOURCE_CACHE)
+    set (CPM_DOWNLOAD_LOCATION "${CPM_SOURCE_CACHE}/cpm/CPM_${CPM_DOWNLOAD_VERSION}.cmake")
+elseif (DEFINED ENV{CPM_SOURCE_CACHE})
+    set (CPM_DOWNLOAD_LOCATION "$ENV{CPM_SOURCE_CACHE}/cpm/CPM_${CPM_DOWNLOAD_VERSION}.cmake")
+else ()
+    set (CPM_DOWNLOAD_LOCATION "${CMAKE_BINARY_DIR}/cmake/CPM_${CPM_DOWNLOAD_VERSION}.cmake")
+endif ()
+
+# Expand relative path. This is important if the provided path contains a tilde (~)
+get_filename_component (CPM_DOWNLOAD_LOCATION ${CPM_DOWNLOAD_LOCATION} ABSOLUTE)
+
+file (DOWNLOAD https://github.com/cpm-cmake/CPM.cmake/releases/download/v${CPM_DOWNLOAD_VERSION}/CPM.cmake
+      ${CPM_DOWNLOAD_LOCATION} EXPECTED_HASH SHA256=${CPM_HASH_SUM})
+
+include (${CPM_DOWNLOAD_LOCATION})

cmake/cpack_install.cmake.in

@@ -0,0 +1,13 @@
+# SPDX-FileCopyrightText: 2006-2024, Knut Reinert & Freie Universität Berlin
+# SPDX-FileCopyrightText: 2016-2024, Knut Reinert & MPI für molekulare Genetik
+# SPDX-License-Identifier: BSD-3-Clause
+
+# Only if creating the source package (`make package_source`):
+# Copy dependency include directories into package's staging folder
+if (CPACK_SOURCE_INSTALLED_DIRECTORIES)
+    configure_file ("@CPM_DOWNLOAD_LOCATION@" "${CMAKE_CURRENT_BINARY_DIR}/cmake/CPM.cmake" COPYONLY)
+    if ("@use_ccache_ADDED@" STREQUAL "YES")
+        configure_file ("@use_ccache_SOURCE_DIR@/ccache/CMakeLists.txt"
+                        "${CMAKE_CURRENT_BINARY_DIR}/test/cmake/sharg_require_ccache.cmake" COPYONLY)
+    endif ()
+endif ()

cmake/package-lock.cmake

@@ -0,0 +1,48 @@
+# SPDX-FileCopyrightText: 2006-2024, Knut Reinert & Freie Universität Berlin
+# SPDX-FileCopyrightText: 2016-2024, Knut Reinert & MPI für molekulare Genetik
+# SPDX-License-Identifier: CC0-1.0
+
+# CPM Package Lock
+# This file should be committed to version control
+
+# URL/GIT_TAG may be annotated with a branch name
+# This is needed for https://github.com/seqan/actions/tree/main/update_cpm_package_lock
+
+# The first argument of CPMDeclarePackage can be freely chosen and is used as argument in CPMGetPackage.
+# The NAME argument should be package name that would also be used in a find_package call.
+# Ideally, both are the same, which might not always be possible: https://github.com/cpm-cmake/CPM.cmake/issues/603
+# This is needed to support CPM_USE_LOCAL_PACKAGES
+
+# TDL
+set (SHARG_TDL_VERSION 1.0.1)
+CPMDeclarePackage (tdl
+                   NAME tdl
+                   VERSION ${SHARG_TDL_VERSION}
+                   GITHUB_REPOSITORY deNBI-cibi/tool_description_lib
+                   SYSTEM TRUE
+                   OPTIONS "INSTALL_TDL OFF" "CMAKE_MESSAGE_LOG_LEVEL WARNING")
+# googletest
+set (SHARG_GOOGLETEST_VERSION 1.15.2)
+CPMDeclarePackage (googletest
+                   NAME GTest
+                   VERSION ${SHARG_GOOGLETEST_VERSION}
+                   GITHUB_REPOSITORY google/googletest
+                   SYSTEM TRUE
+                   OPTIONS "BUILD_GMOCK OFF" "INSTALL_GTEST OFF" "CMAKE_MESSAGE_LOG_LEVEL WARNING")
+# doxygen-awesome
+set (SHARG_DOXYGEN_AWESOME_VERSION 2.3.4)
+CPMDeclarePackage (doxygen_awesome
+                   NAME doxygen_awesome
+                   VERSION ${SHARG_DOXYGEN_AWESOME_VERSION}
+                   GITHUB_REPOSITORY jothepro/doxygen-awesome-css
+                   DOWNLOAD_ONLY TRUE
+                   QUIET YES)
+# use_ccache
+set (SHARG_USE_CCACHE_VERSION d2a54ef555b6fc2d496a4c9506dbeb7cf899ce37)
+CPMDeclarePackage (use_ccache
+                   NAME use_ccache
+                   GIT_TAG ${SHARG_USE_CCACHE_VERSION} # main
+                   GITHUB_REPOSITORY seqan/cmake-scripts
+                   SOURCE_SUBDIR ccache
+                   SYSTEM TRUE
+                   EXCLUDE_FROM_ALL TRUE)

cmake/sharg-config.cmake

@@ -108,31 +108,35 @@ macro (sharg_config_error text)
     endif ()
 endmacro ()
 
+# ----------------------------------------------------------------------------
+# CPM
+# ----------------------------------------------------------------------------
+
+# This will be true for git clones and source packages, but not for installed packages.
+if (EXISTS "${CMAKE_CURRENT_LIST_DIR}/CPM.cmake")
+    set (SHARG_HAS_CPM TRUE)
+else ()
+    set (SHARG_HAS_CPM FALSE)
+endif ()
+
+if (SHARG_HAS_CPM)
+    set (CPM_INDENT "  CMake Package Manager CPM: ")
+    include ("${CMAKE_CURRENT_LIST_DIR}/CPM.cmake")
+    CPMUsePackageLock ("${CMAKE_CURRENT_LIST_DIR}/package-lock.cmake")
+endif ()
+
 # ----------------------------------------------------------------------------
 # Find SHARG include path
 # ----------------------------------------------------------------------------
 
 # Note that sharg-config.cmake can be standalone and thus SHARG_CLONE_DIR might be empty.
-# * `SHARG_CLONE_DIR` was already found in sharg-config-version.cmake
 # * `SHARG_INCLUDE_DIR` was already found in sharg-config-version.cmake
-find_path (SHARG_SUBMODULES_DIR
-           NAMES submodules/tool_description_lib
-           HINTS "${SHARG_CLONE_DIR}" "${SHARG_INCLUDE_DIR}/sharg")
-
 if (SHARG_INCLUDE_DIR)
     sharg_config_print ("SHARG include dir found:   ${SHARG_INCLUDE_DIR}")
 else ()
     sharg_config_error ("SHARG include directory could not be found (SHARG_INCLUDE_DIR: '${SHARG_INCLUDE_DIR}')")
 endif ()
 
-# ----------------------------------------------------------------------------
-# Detect if we are a clone of repository and if yes auto-add submodules
-# ----------------------------------------------------------------------------
-
-if (SHARG_CLONE_DIR)
-    sharg_config_print ("Detected as running from a repository checkout…")
-endif ()
-
 # ----------------------------------------------------------------------------
 # Options for CheckCXXSourceCompiles
 # ----------------------------------------------------------------------------
@@ -206,22 +210,13 @@ endif ()
 set (SHARG_USE_TDL FALSE)
 
 if (NOT SHARG_NO_TDL)
-    find_package (TDL QUIET HINTS ${SHARG_HINT_TDL})
-
-    if (NOT TDL_FOUND)
-        if (EXISTS ${SHARG_SUBMODULES_DIR}/submodules/tool_description_lib)
-            include (FetchContent)
-            FetchContent_Declare (tdl SOURCE_DIR ${SHARG_SUBMODULES_DIR}/submodules/tool_description_lib)
-            set (SHARG_LOG_LEVEL ${CMAKE_MESSAGE_LOG_LEVEL})
-            set (CMAKE_MESSAGE_LOG_LEVEL "ERROR")
-            option (INSTALL_TDL "Enable installation of TDL." ${INSTALL_SHARG})
-            FetchContent_MakeAvailable (tdl)
-            set (CMAKE_MESSAGE_LOG_LEVEL ${SHARG_LOG_LEVEL})
-            set (TDL_FOUND TRUE)
-        endif ()
+    if (NOT SHARG_HAS_CPM)
+        find_package (tdl QUIET)
+    else ()
+        CPMGetPackage (tdl)
     endif ()
 
-    if (TDL_FOUND)
+    if (TDL_FOUND OR tdl_ADDED)
         sharg_config_print ("Optional dependency:        TDL found.")
         set (SHARG_USE_TDL TRUE)
         list (APPEND SHARG_LIBRARIES tdl::tdl)
@@ -323,12 +318,6 @@ if (SHARG_FOUND AND NOT TARGET sharg::sharg)
     target_link_libraries (sharg_sharg INTERFACE ${SHARG_LIBRARIES})
     target_include_directories (sharg_sharg INTERFACE "${SHARG_INCLUDE_DIR}")
     add_library (sharg::sharg ALIAS sharg_sharg)
-
-    if (SHARG_USE_TDL)
-        # Include TDL as system header to suppress warnings.
-        get_target_property (tdl_include_dir tdl::tdl INTERFACE_INCLUDE_DIRECTORIES)
-        target_include_directories (sharg_sharg SYSTEM INTERFACE ${tdl_include_dir})
-    endif ()
 endif ()
 
 set (CMAKE_REQUIRED_QUIET ${CMAKE_REQUIRED_QUIET_SAVE})

cmake/sharg-install.cmake

@@ -17,8 +17,7 @@ install (FILES "${SHARG_CLONE_DIR}/CHANGELOG.md" #
          TYPE DOC)
 
 # install cmake files in /share/cmake
-install (FILES "${SHARG_CLONE_DIR}/cmake/sharg-config.cmake"
-               "${SHARG_CLONE_DIR}/cmake/sharg-config-version.cmake"
+install (FILES "${SHARG_CLONE_DIR}/cmake/sharg-config.cmake" "${SHARG_CLONE_DIR}/cmake/sharg-config-version.cmake"
          DESTINATION "${CMAKE_INSTALL_DATADIR}/cmake/sharg")
 
 # install sharg header files in /include/sharg