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Merge pull request #97 from seqeralabs/fix_devcontainer
Fix: Updated devcontainer setup
2 parents b944532 + 14fb3aa commit 376c903

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.devcontainer/setup.sh

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#!/usr/bin/env bash
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# Fix for Java options
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printf 'unset JAVA_TOOL_OPTIONS\n' >> $HOME/.bashrc
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unset JAVA_TOOL_OPTIONS
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# Customise the terminal command prompt
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printf "export PS1='\\[\\e[3;36m\\]\${PWD#/workspaces/} ->\\[\\e[0m\\] '\n" >> $HOME/.bashrc
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export PS1='\[\e[3;36m\]${PWD#/workspaces/} ->\[\e[0m\] '
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# Force Java environment variables to use conda installation
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printf 'export JAVA_HOME=/opt/conda\nexport JAVA_CMD=/opt/conda/bin/java\n' >> $HOME/.bashrc
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export JAVA_HOME=/opt/conda
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export JAVA_CMD=/opt/conda/bin/java
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# Update Nextflow
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nextflow self-update
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nextflow -version

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