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Description
My usual Mac tricks fail here.
With Docker profile (with export CONDA_SUBDIR=osx-64):
ERROR ~ Error executing process > 'NF_AGGREGATE:SEQERA_RUNS_DUMP (38QXz4OfQDpwOV)'
Caused by:
Process `NF_AGGREGATE:SEQERA_RUNS_DUMP (38QXz4OfQDpwOV)` terminated with an error exit status (1)
Command executed:
tw \
\
--url=https://api.tower.nf \
--access-token=$TOWER_ACCESS_TOKEN \
runs \
dump \
-id=38QXz4OfQDpwOV \
--workspace=community/showcase \
--output="38QXz4OfQDpwOV.tar.gz" \
--add-task-logs --add-fusion-logs
mkdir 38QXz4OfQDpwOV
tar \
-xvf \
38QXz4OfQDpwOV.tar.gz \
-C 38QXz4OfQDpwOV
cp 38QXz4OfQDpwOV/workflow.json .
cat <<-END_VERSIONS > versions.yml
"NF_AGGREGATE:SEQERA_RUNS_DUMP":
seqera-cli: $(echo $(tw --version 2>&1) | sed 's/^.*Tower CLI version //; s/ *$//')
END_VERSIONS
Command exit status:
1
Command output:
(empty)
Command error:
The current machine does not support all of the following CPU features that are required by the image: [CX8, CMOV, FXSR, MMX, SSE, SSE2, SSE3, SSSE3, SSE4_1, SSE4_2, POPCNT, LZCNT, AVX, AVX2, BMI1, BMI2, FMA].
Please rebuild the executable with an appropriate setting of the -march option.
Work dir:
/Users/jonathan.manning/projects/nf-aggregate/work/5d/ba6e256d861a138dbdef13f0475bf4
Tip: you can try to figure out what's wrong by changing to the process work dir and showing the script file named `.command.sh`
-- Check '.nextflow.log' file for details
With conda:
ERROR ~ Error executing process > 'NF_AGGREGATE:SEQERA_RUNS_DUMP (2lXd1j7OwZVfxh)'
Caused by:
Process `NF_AGGREGATE:SEQERA_RUNS_DUMP (2lXd1j7OwZVfxh)` terminated with an error exit status (137)
Command executed:
tw \
\
--url=https://api.tower.nf \
--access-token=$TOWER_ACCESS_TOKEN \
runs \
dump \
-id=2lXd1j7OwZVfxh \
--workspace=community/showcase \
--output="2lXd1j7OwZVfxh.tar.gz" \
--add-task-logs --add-fusion-logs
mkdir 2lXd1j7OwZVfxh
tar \
-xvf \
2lXd1j7OwZVfxh.tar.gz \
-C 2lXd1j7OwZVfxh
cp 2lXd1j7OwZVfxh/workflow.json .
cat <<-END_VERSIONS > versions.yml
"NF_AGGREGATE:SEQERA_RUNS_DUMP":
seqera-cli: $(echo $(tw --version 2>&1) | sed 's/^.*Tower CLI version //; s/ *$//')
END_VERSIONS
Command exit status:
137
Command output:
(empty)
Command error:
.command.sh: line 11: 85350 Killed: 9 tw --url=https://api.tower.nf --access-token=$TOWER_ACCESS_TOKEN runs dump -id=2lXd1j7OwZVfxh --workspace=community/showcase --output="2lXd1j7OwZVfxh.tar.gz" --add-task-logs --add-fusion-logs
Work dir:
/Users/jonathan.manning/projects/nf-aggregate/work/5e/42bd1d4d5748b4db6973e837813fcf
Tip: you can replicate the issue by changing to the process work dir and entering the command `bash .command.run`
-- Check '.nextflow.log' file for details
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