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Difficult to get running on MacOS #7

@pinin4fjords

Description

@pinin4fjords

My usual Mac tricks fail here.

With Docker profile (with export CONDA_SUBDIR=osx-64):

ERROR ~ Error executing process > 'NF_AGGREGATE:SEQERA_RUNS_DUMP (38QXz4OfQDpwOV)'

Caused by:
  Process `NF_AGGREGATE:SEQERA_RUNS_DUMP (38QXz4OfQDpwOV)` terminated with an error exit status (1)

Command executed:

  tw \
       \
      --url=https://api.tower.nf \
      --access-token=$TOWER_ACCESS_TOKEN \
      runs \
      dump \
      -id=38QXz4OfQDpwOV \
      --workspace=community/showcase \
      --output="38QXz4OfQDpwOV.tar.gz" \
      --add-task-logs --add-fusion-logs
  
  mkdir 38QXz4OfQDpwOV
  tar \
      -xvf \
      38QXz4OfQDpwOV.tar.gz \
      -C 38QXz4OfQDpwOV
  
  cp 38QXz4OfQDpwOV/workflow.json .
  
  cat <<-END_VERSIONS > versions.yml
  "NF_AGGREGATE:SEQERA_RUNS_DUMP":
      seqera-cli: $(echo $(tw --version 2>&1) | sed 's/^.*Tower CLI version //; s/ *$//')
  END_VERSIONS

Command exit status:
  1

Command output:
  (empty)

Command error:
  The current machine does not support all of the following CPU features that are required by the image: [CX8, CMOV, FXSR, MMX, SSE, SSE2, SSE3, SSSE3, SSE4_1, SSE4_2, POPCNT, LZCNT, AVX, AVX2, BMI1, BMI2, FMA].
  Please rebuild the executable with an appropriate setting of the -march option.

Work dir:
  /Users/jonathan.manning/projects/nf-aggregate/work/5d/ba6e256d861a138dbdef13f0475bf4

Tip: you can try to figure out what's wrong by changing to the process work dir and showing the script file named `.command.sh`

 -- Check '.nextflow.log' file for details

With conda:

ERROR ~ Error executing process > 'NF_AGGREGATE:SEQERA_RUNS_DUMP (2lXd1j7OwZVfxh)'

Caused by:
  Process `NF_AGGREGATE:SEQERA_RUNS_DUMP (2lXd1j7OwZVfxh)` terminated with an error exit status (137)

Command executed:

  tw \
       \
      --url=https://api.tower.nf \
      --access-token=$TOWER_ACCESS_TOKEN \
      runs \
      dump \
      -id=2lXd1j7OwZVfxh \
      --workspace=community/showcase \
      --output="2lXd1j7OwZVfxh.tar.gz" \
      --add-task-logs --add-fusion-logs
  
  mkdir 2lXd1j7OwZVfxh
  tar \
      -xvf \
      2lXd1j7OwZVfxh.tar.gz \
      -C 2lXd1j7OwZVfxh
  
  cp 2lXd1j7OwZVfxh/workflow.json .
  
  cat <<-END_VERSIONS > versions.yml
  "NF_AGGREGATE:SEQERA_RUNS_DUMP":
      seqera-cli: $(echo $(tw --version 2>&1) | sed 's/^.*Tower CLI version //; s/ *$//')
  END_VERSIONS

Command exit status:
  137

Command output:
  (empty)

Command error:
  .command.sh: line 11: 85350 Killed: 9               tw --url=https://api.tower.nf --access-token=$TOWER_ACCESS_TOKEN runs dump -id=2lXd1j7OwZVfxh --workspace=community/showcase --output="2lXd1j7OwZVfxh.tar.gz" --add-task-logs --add-fusion-logs

Work dir:
  /Users/jonathan.manning/projects/nf-aggregate/work/5e/42bd1d4d5748b4db6973e837813fcf

Tip: you can replicate the issue by changing to the process work dir and entering the command `bash .command.run`

 -- Check '.nextflow.log' file for details

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