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Description
Description of the bug
When trying to generate the report for GCP runs with version 0.6.0, without the CUR/cost reports provided, the pipeline still throws an error at the report generation step:
processing file: main_benchmark_report.qmd
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2/37 [import-libraries]
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6/37 [read-platform-logs]
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10/37 [generate-cost-table]
�[31mError in `select()`:
! Can't select columns that don't exist.
✖ Column `cost` doesn't exist.
Backtrace:
▆
1. ├─task_data %>% ...
2. ├─dplyr::select(., run_id, pipeline, group, process, cost, hash)
3. ├─dplyr:::select.data.frame(., run_id, pipeline, group, process, cost, hash)
4. │ └─tidyselect::eval_select(expr(c(...)), data = .data, error_call = error_call)
5. │ └─tidyselect:::eval_select_impl(...)
6. │ ├─tidyselect:::with_subscript_errors(...)
7. │ │ └─base::withCallingHandlers(...)
8. │ └─tidyselect:::vars_select_eval(...)
9. │ └─tidyselect:::walk_data_tree(expr, data_mask, context_mask)
10. │ └─tidyselect:::eval_c(expr, data_mask, context_mask)
11. │ └─tidyselect:::reduce_sels(node, data_mask, context_mask, init = init)
12. │ └─tidyselect:::walk_data_tree(new, data_mask, context_mask)
13. │ └─tidyselect:::as_indices_sel_impl(...)
14. │ └─tidyselect:::as_indices_impl(...)
15. │ └─tidyselect:::chr_as_locations(x, vars, call = call, arg = arg)
16. │ └─vctrs::vec_as_location(...)
17. └─vctrs (local) `<fn>`()
18. └─vctrs:::stop_subscript_oob(...)
19. └─vctrs:::stop_subscript(...)
20. └─rlang::abort(...)
�[39m�[31m
Quitting from main_benchmark_report.qmd:283-403 [generate-cost-table]
�[39m�[31mExecution halted
�[39m
This is when setting generate_benchmark_report: true and omitting --benchmark_aws_cur_report. Execution log is attached.
Command used and terminal output
Relevant files
System information
- Nextflow version 25.04.2
- Executor: GCP
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bugSomething isn't workingSomething isn't working