diff --git a/.devcontainer/setup.sh b/.devcontainer/setup.sh index c9b04c2..0cf79da 100644 --- a/.devcontainer/setup.sh +++ b/.devcontainer/setup.sh @@ -1,18 +1,9 @@ #!/usr/bin/env bash -# Fix for Java options -printf 'unset JAVA_TOOL_OPTIONS\n' >> $HOME/.bashrc -unset JAVA_TOOL_OPTIONS - # Customise the terminal command prompt printf "export PS1='\\[\\e[3;36m\\]\${PWD#/workspaces/} ->\\[\\e[0m\\] '\n" >> $HOME/.bashrc export PS1='\[\e[3;36m\]${PWD#/workspaces/} ->\[\e[0m\] ' -# Force Java environment variables to use conda installation -printf 'export JAVA_HOME=/opt/conda\nexport JAVA_CMD=/opt/conda/bin/java\n' >> $HOME/.bashrc -export JAVA_HOME=/opt/conda -export JAVA_CMD=/opt/conda/bin/java - # Update Nextflow nextflow self-update nextflow -version