Merge pull request #59 from seqeralabs/seqera-ai/20251125-034859-fix-test-profile-parameters

Fix test profile parameter name mismatch and enable Foldseek

Author: FloWuenne

conf/test_design_nanobody.config

@@ -31,7 +31,7 @@ params {
     // Enable all metrics modules for comprehensive testing
     run_proteinmpnn            = true
     mpnn_num_seq_per_target    = 2     // Reduced from default 8 for faster testing
-    run_protenix_refold        = true
+    run_boltz2_refold          = true
     run_ipsae                  = true
     run_prodigy                = true
     run_foldseek               = true

conf/test_design_peptide.config

@@ -31,7 +31,7 @@ params {
     // Enable all metrics modules for comprehensive testing
     run_proteinmpnn            = true
     mpnn_num_seq_per_target    = 2     // Reduced from default 8 for faster testing
-    run_protenix_refold        = true
+    run_boltz2_refold          = true
     run_ipsae                  = true
     run_prodigy                = true
     run_foldseek               = true

conf/test_design_protein.config

@@ -31,10 +31,10 @@ params {
     // Enable all metrics modules for comprehensive testing
     run_proteinmpnn            = true
     mpnn_num_seq_per_target    = 2     // Reduced from default 8 for faster testing
-    run_protenix_refold        = true
+    run_boltz2_refold          = true
     run_ipsae                  = true
     run_prodigy                = true
-    run_foldseek               = false
+    run_foldseek               = true
     run_consolidation          = true
 
     // Output