deprecated affinity inference

Author: torms3

deepem/test/cv_utils.py

@@ -111,5 +111,6 @@ def ingest(data, opt, tag=None):
         from igneous.task_creation import create_downsampling_tasks
 
         with LocalTaskQueue(parallel=opt.parallel) as tq:
-            create_downsampling_tasks(tq, gs_path, mip=0,
-                                      fill_missing=True)
+            # create_downsampling_tasks(tq, gs_path, mip=0, fill_missing=True)
+            tasks = create_downsampling_tasks(gs_path, mip=0, fill_missing=True)
+            tq.insert_all(tasks)

deepem/test/option.py

@@ -39,7 +39,7 @@ def initialize(self):
         # Multiclass detection
         self.parser.add_argument('--aff',  action='store_true')
         self.parser.add_argument('--long', type=int, default=0)
-        self.parser.add_argument('--aff_deprecated', type=int, default=16)
+        self.parser.add_argument('--aff_deprecated', type=int, default=None)
         self.parser.add_argument('--bdr',  action='store_true')
         self.parser.add_argument('--syn',  action='store_true')
         self.parser.add_argument('--psd',  action='store_true')