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lines changed Original file line number Diff line number Diff line change @@ -27,10 +27,10 @@ jobs:
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python-version : ["3.9", "3.10", "3.11"]
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exclude :
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# Just run macos tests on one Python version
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- - os : macos-13
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- python-version : " 3.9"
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- os : macos-13
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python-version : " 3.10"
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+ - os : macos-13
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+ python-version : " 3.11"
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- os : macos-14
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python-version : " 3.9"
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- os : macos-14
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run : |
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python -m pip install --upgrade pip
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python -m pip install '.[dev]'
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+ - name : Run basic vcf2zarr example
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+ run : |
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+ python -m bio2zarr vcf2zarr convert tests/data/vcf/sample.vcf.gz sample.vcz -f
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- name : Run tests
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run : |
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pytest --cov=bio2zarr
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# This is a quick workaround for doing a proper "parallel" setup:
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# https://github.com/coverallsapp/github-action
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fail-on-error : false
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- - name : Run basic vcf2zarr example
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- run : |
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- python -m bio2zarr vcf2zarr convert tests/data/vcf/sample.vcf.gz sample.vcz -f
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packaging :
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name : Packaging
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