Fix some tests and add some extra

Author: jeromekelleher

bio2zarr/cli.py

@@ -31,7 +31,7 @@
     help="Chunk size in the samples dimension",
 )
 
-version = click.version_option(version=f"bio2zarr {provenance.__version__}")
+version = click.version_option(version=f"{provenance.__version__}")
 
 
 # Note: logging hasn't been implemented in the code at all, this is just

tests/test_cli.py

@@ -127,6 +127,7 @@ def test_convert_plink(self):
             )
 
 
+
 class TestVcfPartition:
     def test_num_parts(self):
         path = "tests/data/vcf/NA12878.prod.chr20snippet.g.vcf.gz"

tests/test_vcf_examples.py

@@ -334,6 +334,19 @@ def test_worker_processes(self, ds, tmp_path, worker_processes):
         ds2 = sg.load_dataset(out)
         xt.assert_equal(ds, ds2)
 
+    def test_inspect(self, tmp_path):
+        # TODO pretty weak test, we should be doing this better somewhere else
+        out = tmp_path / "example.vcf.zarr"
+        vcf.convert(
+            [self.data_path],
+            out,
+            chunk_length=3,
+        )
+        data = vcf.inspect(out)
+        assert len(data) > 0
+        for row in data:
+            assert "name" in row
+
 
 class Test1000G2020Example:
     data_path = "tests/data/vcf/1kg_2020_chrM.vcf.gz"