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| 1 | +##fileformat=VCFv4.2 |
| 2 | +##fileDate=20250521 |
| 3 | +##source=PLINKv1.90 |
| 4 | +##contig=<ID=1,length=101> |
| 5 | +##INFO=<ID=PR,Number=0,Type=Flag,Description="Provisional reference allele, may not be based on real reference genome"> |
| 6 | +##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> |
| 7 | +#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT 000 001 002 003 004 005 006 007 008 009 |
| 8 | +1 1 1:1:G:CGCGCG CGCGCG G . . PR GT 0/1 0/0 0/1 0/1 1/1 1/1 0/0 0/0 0/1 0/0 |
| 9 | +1 2 1:2:ACT:G ACT G . . PR GT 0/1 0/0 1/1 0/1 0/0 0/1 0/1 0/1 0/1 1/1 |
| 10 | +1 3 1:3:ACT:G G ACT . . PR GT 0/1 ./. 0/0 0/0 0/0 1/1 0/1 0/1 0/1 0/1 |
| 11 | +1 4 1:4:G:CGCGCG CGCGCG G . . PR GT 0/1 0/1 ./. 1/1 0/1 0/0 0/0 0/1 0/0 0/1 |
| 12 | +1 5 1:5:G:CGCGCG G CGCGCG . . PR GT ./. 0/0 1/1 1/1 0/1 1/1 ./. 0/0 0/1 0/0 |
| 13 | +1 6 1:6:ACT:G G ACT . . PR GT 1/1 0/0 1/1 1/1 0/0 0/1 0/1 0/0 0/1 0/0 |
| 14 | +1 7 1:7:G:CGCGCG G CGCGCG . . PR GT 0/1 0/0 0/1 0/1 0/0 0/1 0/1 0/1 ./. 0/0 |
| 15 | +1 8 1:8:T:GTGG GTGG T . . PR GT ./. 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/1 0/0 |
| 16 | +1 9 1:9:T:GTGG GTGG T . . PR GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 |
| 17 | +1 10 1:10:A:C C A . . PR GT 0/1 ./. 0/1 0/1 0/1 0/1 ./. 0/1 0/1 0/0 |
| 18 | +1 11 1:11:ACT:G G ACT . . PR GT 0/0 0/0 0/0 0/0 ./. 0/0 0/0 ./. 0/0 ./. |
| 19 | +1 12 1:12:G:CGCGCG CGCGCG G . . PR GT 0/0 0/0 ./. 1/1 0/1 0/0 0/1 ./. 1/1 0/0 |
| 20 | +1 13 1:13:G:CGCGCG CGCGCG G . . PR GT 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 |
| 21 | +1 14 1:14:T:GTGG GTGG T . . PR GT 0/0 ./. 0/1 0/0 0/1 0/0 ./. 0/1 ./. ./. |
| 22 | +1 15 1:15:ACT:G G ACT . . PR GT 0/1 0/0 1/1 0/0 0/0 0/0 1/1 0/0 0/1 0/1 |
| 23 | +1 16 1:16:A:C A C . . PR GT 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 |
| 24 | +1 17 1:17:ACT:G G ACT . . PR GT 0/0 0/0 0/0 0/1 0/1 0/0 1/1 ./. 0/0 0/0 |
| 25 | +1 18 1:18:T:GTGG GTGG T . . PR GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
| 26 | +1 19 1:19:A:C C A . . PR GT 0/1 0/1 1/1 0/1 0/1 ./. 0/0 0/1 0/0 0/1 |
| 27 | +1 20 1:20:A:C A C . . PR GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 0/0 |
| 28 | +1 21 1:21:T:GTGG GTGG T . . PR GT 0/0 0/1 0/0 0/0 0/0 0/0 0/1 0/1 0/0 0/0 |
| 29 | +1 22 1:22:G:CGCGCG CGCGCG G . . PR GT 0/1 0/1 0/1 ./. 0/0 0/0 ./. 0/0 0/1 ./. |
| 30 | +1 23 1:23:T:GTGG GTGG T . . PR GT 0/0 0/1 0/1 ./. ./. 0/1 0/1 0/1 0/0 0/1 |
| 31 | +1 24 1:24:A:C A C . . PR GT 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/0 |
| 32 | +1 25 1:25:A:C A C . . PR GT 0/0 0/0 ./. ./. ./. ./. 0/0 0/1 0/1 0/0 |
| 33 | +1 26 1:26:ACT:G G ACT . . PR GT 0/1 0/0 0/0 0/1 0/0 ./. 0/0 0/1 0/1 0/0 |
| 34 | +1 27 1:27:G:CGCGCG G CGCGCG . . PR GT 0/1 0/0 0/0 0/0 ./. 0/0 ./. 0/1 0/0 0/0 |
| 35 | +1 28 1:28:ACT:G ACT G . . PR GT 0/0 1/1 0/0 0/1 0/0 ./. 0/1 0/0 0/1 1/1 |
| 36 | +1 29 1:29:T:GTGG GTGG T . . PR GT 0/0 0/1 0/0 0/0 ./. ./. ./. 0/0 0/1 0/0 |
| 37 | +1 30 1:30:A:C A C . . PR GT 0/0 0/0 0/0 0/1 0/0 0/1 0/1 0/0 0/1 0/0 |
| 38 | +1 31 1:31:T:GTGG GTGG T . . PR GT 1/1 0/0 0/0 0/0 0/0 0/1 0/0 ./. 0/1 0/0 |
| 39 | +1 32 1:32:G:CGCGCG G CGCGCG . . PR GT 0/1 0/1 0/0 0/0 ./. 0/0 1/1 ./. 0/0 0/1 |
| 40 | +1 33 1:33:ACT:G G ACT . . PR GT 0/1 0/1 0/1 0/1 0/0 0/1 0/0 0/1 0/1 0/0 |
| 41 | +1 34 1:34:G:CGCGCG G CGCGCG . . PR GT 0/1 1/1 0/1 ./. 0/1 ./. 0/1 0/0 0/0 ./. |
| 42 | +1 35 1:35:A:C A C . . PR GT 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 ./. 0/1 |
| 43 | +1 36 1:36:G:CGCGCG CGCGCG G . . PR GT ./. 1/1 ./. 0/0 0/0 0/0 0/0 0/0 0/1 0/0 |
| 44 | +1 37 1:37:T:GTGG GTGG T . . PR GT 0/0 0/1 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 |
| 45 | +1 38 1:38:A:C A C . . PR GT 0/1 0/0 0/0 ./. 1/1 1/1 ./. 0/0 0/1 0/0 |
| 46 | +1 39 1:39:A:C A C . . PR GT 0/0 0/0 0/1 0/1 0/1 0/0 0/0 0/0 0/1 0/0 |
| 47 | +1 40 1:40:T:GTGG GTGG T . . PR GT 0/0 0/0 1/1 0/1 ./. 0/1 0/0 0/1 0/0 0/0 |
| 48 | +1 41 1:41:A:C A C . . PR GT 0/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
| 49 | +1 42 1:42:G:CGCGCG CGCGCG G . . PR GT 0/1 ./. 0/1 0/1 0/1 0/0 0/1 0/1 0/0 1/1 |
| 50 | +1 43 1:43:T:GTGG GTGG T . . PR GT 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 ./. 0/0 |
| 51 | +1 44 1:44:ACT:G G ACT . . PR GT 0/0 1/1 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
| 52 | +1 45 1:45:G:CGCGCG CGCGCG G . . PR GT 1/1 0/0 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/1 |
| 53 | +1 46 1:46:ACT:G G ACT . . PR GT 0/0 0/0 0/0 0/1 0/1 0/0 0/1 0/0 0/1 0/0 |
| 54 | +1 47 1:47:G:CGCGCG CGCGCG G . . PR GT 0/0 0/1 ./. 0/1 0/0 0/0 0/1 0/1 0/1 1/1 |
| 55 | +1 48 1:48:A:C A C . . PR GT 0/1 0/0 0/1 ./. 0/0 0/0 0/1 0/0 0/0 0/0 |
| 56 | +1 49 1:49:A:C A C . . PR GT 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 ./. 0/0 |
| 57 | +1 50 1:50:A:C A C . . PR GT 0/1 ./. ./. ./. 0/0 0/0 ./. ./. 0/0 0/1 |
| 58 | +1 51 1:51:G:CGCGCG G CGCGCG . . PR GT 0/1 0/0 1/1 0/0 0/0 0/1 0/1 0/1 0/1 0/0 |
| 59 | +1 52 1:52:A:C A C . . PR GT 0/0 0/0 0/0 0/1 0/0 0/0 0/1 ./. ./. 0/1 |
| 60 | +1 53 1:53:ACT:G G ACT . . PR GT 0/0 ./. 0/1 0/0 0/0 ./. 0/0 0/1 0/1 1/1 |
| 61 | +1 54 1:54:A:C A C . . PR GT 0/1 ./. 0/0 0/1 ./. ./. ./. 1/1 0/0 0/0 |
| 62 | +1 55 1:55:G:CGCGCG CGCGCG G . . PR GT 0/1 0/0 0/1 0/0 0/1 0/1 ./. 0/1 0/0 0/1 |
| 63 | +1 56 1:56:T:GTGG GTGG T . . PR GT 0/0 0/1 ./. 0/1 0/0 0/1 0/1 0/0 1/1 ./. |
| 64 | +1 57 1:57:G:CGCGCG G CGCGCG . . PR GT 0/1 0/0 1/1 0/1 0/1 ./. 0/0 1/1 0/0 1/1 |
| 65 | +1 58 1:58:A:C C A . . PR GT 0/0 0/0 0/1 0/0 0/0 0/1 1/1 0/1 0/0 0/1 |
| 66 | +1 59 1:59:T:GTGG GTGG T . . PR GT 0/1 0/1 0/0 0/0 ./. 0/1 0/1 ./. 0/1 0/1 |
| 67 | +1 60 1:60:G:CGCGCG CGCGCG G . . PR GT 0/0 0/1 0/1 0/1 1/1 0/0 1/1 0/1 0/1 0/0 |
| 68 | +1 61 1:61:ACT:G G ACT . . PR GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 ./. |
| 69 | +1 62 1:62:A:C A C . . PR GT 1/1 0/0 0/0 0/0 0/0 ./. 0/0 0/1 0/1 ./. |
| 70 | +1 63 1:63:G:CGCGCG CGCGCG G . . PR GT 0/1 ./. 1/1 0/0 0/1 ./. 0/1 0/0 0/1 0/0 |
| 71 | +1 64 1:64:T:GTGG GTGG T . . PR GT 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/0 0/0 |
| 72 | +1 65 1:65:T:GTGG GTGG T . . PR GT 0/1 0/0 0/0 0/0 0/1 0/1 0/0 0/1 0/0 0/0 |
| 73 | +1 66 1:66:ACT:G ACT G . . PR GT 1/1 0/0 0/1 0/0 0/0 0/1 0/0 0/1 0/1 0/0 |
| 74 | +1 67 1:67:T:GTGG GTGG T . . PR GT 0/0 0/0 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/1 |
| 75 | +1 68 1:68:ACT:G G ACT . . PR GT 0/1 0/0 0/0 ./. 0/0 0/1 0/0 0/1 0/0 0/1 |
| 76 | +1 69 1:69:G:CGCGCG G CGCGCG . . PR GT 0/1 0/0 0/1 0/0 0/1 0/0 0/0 0/1 0/1 0/0 |
| 77 | +1 70 1:70:G:CGCGCG CGCGCG G . . PR GT 0/1 0/0 0/0 0/1 1/1 0/0 0/0 0/0 1/1 0/1 |
| 78 | +1 71 1:71:ACT:G G ACT . . PR GT 0/1 0/0 0/1 1/1 1/1 0/1 0/0 0/0 0/0 0/1 |
| 79 | +1 72 1:72:G:CGCGCG CGCGCG G . . PR GT 0/0 0/1 0/0 0/1 ./. ./. 0/0 0/0 1/1 0/1 |
| 80 | +1 73 1:73:A:C A C . . PR GT 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
| 81 | +1 74 1:74:A:C A C . . PR GT 0/0 0/0 0/1 0/0 0/0 0/0 1/1 1/1 0/0 0/1 |
| 82 | +1 75 1:75:T:GTGG GTGG T . . PR GT 0/0 0/1 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/0 |
| 83 | +1 76 1:76:A:C A C . . PR GT 0/0 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 0/0 |
| 84 | +1 77 1:77:ACT:G G ACT . . PR GT ./. 0/0 0/0 0/0 0/1 0/1 ./. 0/0 0/0 0/0 |
| 85 | +1 78 1:78:ACT:G G ACT . . PR GT 0/0 0/1 0/0 ./. 0/0 0/0 0/0 0/0 0/0 0/0 |
| 86 | +1 79 1:79:A:C A C . . PR GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/1 0/0 0/1 |
| 87 | +1 80 1:80:A:C A C . . PR GT 0/0 0/0 0/0 ./. 0/0 0/0 0/1 0/0 ./. 0/0 |
| 88 | +1 81 1:81:A:C A C . . PR GT 0/0 0/1 ./. 0/1 ./. 0/0 0/0 1/1 0/1 0/1 |
| 89 | +1 82 1:82:T:GTGG GTGG T . . PR GT 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/0 0/1 0/0 |
| 90 | +1 83 1:83:A:C A C . . PR GT 0/0 0/1 0/0 0/0 1/1 ./. 0/0 0/0 0/1 0/1 |
| 91 | +1 84 1:84:ACT:G G ACT . . PR GT 0/0 ./. 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 |
| 92 | +1 85 1:85:A:C A C . . PR GT 0/0 0/1 0/0 0/1 0/0 0/0 0/0 0/0 0/0 0/0 |
| 93 | +1 86 1:86:G:CGCGCG G CGCGCG . . PR GT 0/0 0/0 1/1 0/1 0/0 0/1 0/1 0/1 0/1 1/1 |
| 94 | +1 87 1:87:ACT:G G ACT . . PR GT 0/1 0/0 0/0 0/0 0/1 0/0 0/0 0/1 0/0 0/0 |
| 95 | +1 88 1:88:A:C A C . . PR GT 0/1 0/1 0/1 0/0 ./. ./. 0/0 0/1 0/0 0/0 |
| 96 | +1 89 1:89:A:C A C . . PR GT 0/0 0/0 0/1 0/0 0/0 ./. 0/0 0/0 0/0 1/1 |
| 97 | +1 90 1:90:T:GTGG T GTGG . . PR GT 0/1 0/1 0/0 0/1 ./. 0/1 0/1 1/1 0/0 0/1 |
| 98 | +1 91 1:91:T:GTGG GTGG T . . PR GT 0/1 0/0 0/0 0/1 0/0 0/0 0/0 ./. 0/0 0/1 |
| 99 | +1 92 1:92:T:GTGG GTGG T . . PR GT ./. 0/0 0/0 0/1 0/0 0/1 0/1 0/1 0/0 0/0 |
| 100 | +1 93 1:93:A:C A C . . PR GT 0/1 0/1 0/1 0/1 0/0 0/0 ./. ./. 0/0 0/0 |
| 101 | +1 94 1:94:A:C A C . . PR GT 0/0 0/0 0/0 0/0 0/1 0/0 0/0 0/0 0/1 0/1 |
| 102 | +1 95 1:95:A:C A C . . PR GT 0/1 0/0 0/1 0/1 0/0 0/0 0/0 0/1 0/1 0/0 |
| 103 | +1 96 1:96:A:C A C . . PR GT 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 0/0 ./. |
| 104 | +1 97 1:97:T:GTGG GTGG T . . PR GT 0/0 0/0 0/0 ./. 0/0 0/0 0/0 0/0 ./. 0/0 |
| 105 | +1 98 1:98:ACT:G G ACT . . PR GT 0/0 0/1 1/1 1/1 0/0 0/1 0/1 0/1 0/1 0/0 |
| 106 | +1 99 1:99:T:GTGG GTGG T . . PR GT 0/1 0/0 0/0 ./. 0/0 0/0 0/1 0/0 0/1 0/0 |
| 107 | +1 100 1:100:A:C A C . . PR GT 0/1 1/1 0/0 0/1 0/1 ./. ./. 0/0 0/0 0/0 |
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