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lines changed Original file line number Diff line number Diff line change @@ -101,16 +101,6 @@ jobs:
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python -m bio2zarr tskit2zarr convert tests/data/ts/example.trees ts.vcz
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deactivate
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- python -m venv env-plink
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- source env-plink/bin/activate
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- python -m pip install .
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- python -m bio2zarr plink2zarr convert tests/data/plink/example plink.vcz > plink.txt 2>&1 || echo $? > plink_exit.txt
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- test "$(cat plink_exit.txt)" = "1"
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- grep -q "This process requires the optional bed_reader module. Install it with: pip install bio2zarr\[plink\]" plink.txt
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- python -m pip install '.[plink]'
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- python -m bio2zarr plink2zarr convert tests/data/plink/example plink.vcz
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- deactivate
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-
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python -m venv env-vcf
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source env-vcf/bin/activate
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python -m pip install .
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