File tree Expand file tree Collapse file tree 1 file changed +15
-8
lines changed Expand file tree Collapse file tree 1 file changed +15
-8
lines changed Original file line number Diff line number Diff line change 1
1
# Installation
2
2
3
3
4
- ```
5
- $ python3 -m pip install bio2zarr
4
+ ``` bash
5
+ python3 -m pip install bio2zarr
6
6
```
7
7
8
- This will install the programs `` vcf2zarr `` , `` plink2zarr `` and `` vcf_partition ``
8
+ This will install the programs `` vcf2zarr `` and `` vcf_partition ``
9
9
into your local Python path. You may need to update your $PATH to call the
10
10
executables directly.
11
11
12
12
Alternatively, calling
13
- ```
14
- $ python3 -m bio2zarr vcf2zarr <args>
13
+ ``` bash
14
+ python3 -m bio2zarr vcf2zarr < args>
15
15
```
16
16
is equivalent to
17
17
18
- ```
19
- $ vcf2zarr <args>
18
+ ``` bash
19
+ vcf2zarr < args>
20
20
```
21
21
and will always work.
22
22
23
23
24
+ :::{warning}
25
+ Windows is not currently supported. Please comment on
26
+ [ this issue] ( https://github.com/sgkit-dev/bio2zarr/issues/174 ) if you would
27
+ like to see Windows support for bio2zarr.
28
+ :::
29
+
30
+
24
31
## Shell completion
25
32
26
33
To enable shell completion for a particular session in Bash do:
27
34
28
- ```
35
+ ``` bash
29
36
eval " $( _VCF2ZARR_COMPLETE=bash_source vcf2zarr) "
30
37
```
31
38
You can’t perform that action at this time.
0 commit comments