sgkit-dev
diff --git a/‎bio2zarr/vcf_utils.py‎
Lines changed: 1 addition & 2 deletions b/‎bio2zarr/vcf_utils.py‎
Lines changed: 1 addition & 2 deletions
diff --git a/‎tests/data/CEUTrio.20.21.gatk3.4.csi.g.vcf.bgz‎
-317 KB b/‎tests/data/CEUTrio.20.21.gatk3.4.csi.g.vcf.bgz‎
-317 KB
diff --git a/‎tests/data/CEUTrio.20.21.gatk3.4.csi.g.vcf.bgz.csi‎
-194 Bytes b/‎tests/data/CEUTrio.20.21.gatk3.4.csi.g.vcf.bgz.csi‎
-194 Bytes
diff --git a/‎tests/data/CEUTrio.20.21.gatk3.4.noindex.g.vcf.bgz‎
-317 KB b/‎tests/data/CEUTrio.20.21.gatk3.4.noindex.g.vcf.bgz‎
-317 KB
diff --git a/‎tests/data/vcf/1kg_2020_chrM.bcf‎
4.68 KB b/‎tests/data/vcf/1kg_2020_chrM.bcf‎
4.68 KB
diff --git a/‎tests/data/vcf/1kg_2020_chrM.bcf.csi‎
101 Bytes b/‎tests/data/vcf/1kg_2020_chrM.bcf.csi‎
101 Bytes
diff --git a/‎tests/data/NA12878.prod.chr20snippet.g.vcf.gz‎ renamed to ‎tests/data/vcf/NA12878.prod.chr20snippet.g.vcf.gz‎ b/‎tests/data/NA12878.prod.chr20snippet.g.vcf.gz‎ renamed to ‎tests/data/vcf/NA12878.prod.chr20snippet.g.vcf.gz‎
diff --git a/‎tests/data/NA12878.prod.chr20snippet.g.vcf.gz.tbi‎ renamed to ‎tests/data/vcf/NA12878.prod.chr20snippet.g.vcf.gz.tbi‎ b/‎tests/data/NA12878.prod.chr20snippet.g.vcf.gz.tbi‎ renamed to ‎tests/data/vcf/NA12878.prod.chr20snippet.g.vcf.gz.tbi‎
diff --git a/‎tests/data/vcf/sample.bcf‎
1.18 KB b/‎tests/data/vcf/sample.bcf‎
1.18 KB
diff --git a/‎tests/data/vcf/sample.bcf.csi‎
167 Bytes b/‎tests/data/vcf/sample.bcf.csi‎
167 Bytes
@@ -1,5 +1,6 @@
 from typing import Any, Dict, Optional, Sequence, Union
 import re
+import pathlib
 import itertools
 from dataclasses import dataclass
 
@@ -8,8 +9,6 @@
 from cyvcf2 import VCF
 import humanfriendly
 
-from bio2zarr.csi import CSI_EXTENSION, read_csi
-from bio2zarr.tbi import TABIX_EXTENSION, read_tabix
 from bio2zarr.typing import PathType
 from bio2zarr.utils import (
     get_file_offset,