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lines changed Original file line number Diff line number Diff line change @@ -94,11 +94,11 @@ jobs:
9494 python -m venv env-tskit
9595 source env-tskit/bin/activate
9696 python -m pip install .
97- python -m bio2zarr tskit2zarr convert tests/data/ts /example.trees ts.vcz > ts.txt 2>&1 || echo $? > ts_exit.txt
97+ python -m bio2zarr tskit2zarr convert tests/data/tskit /example.trees ts.vcz > ts.txt 2>&1 || echo $? > ts_exit.txt
9898 test "$(cat ts_exit.txt)" = "1"
9999 grep -q "This process requires the optional tskit module. Install it with: pip install bio2zarr\[tskit\]" ts.txt
100100 python -m pip install '.[tskit]'
101- python -m bio2zarr tskit2zarr convert tests/data/ts /example.trees ts.vcz
101+ python -m bio2zarr tskit2zarr convert tests/data/tskit /example.trees ts.vcz
102102 deactivate
103103
104104 python -m venv env-vcf
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