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pip install -U 'numpy<2.1' -U git+https://github.com/sgkit-dev/bio2zarr.git
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# - name: Run pre-commit
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# uses: pre-commit/[email protected]
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- - name : Test with pytest (numba jit disabled)
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- env :
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- NUMBA_DISABLE_JIT : 1
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- run : |
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- # avoid guvectorized functions #1194
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- pytest -v sgkit/tests/test_pedigree.py
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- name : Test with pytest and coverage
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run : |
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pytest -v --cov=sgkit --cov-report=term-missing
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pip install -r requirements.txt -r requirements-dev.txt
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- name : Run pre-commit
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uses :
pre-commit/[email protected]
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- - name : Test with pytest (numba jit disabled)
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- env :
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- NUMBA_DISABLE_JIT : 1
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- run : |
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- # avoid guvectorized functions #1194
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- pytest -v sgkit/tests/test_pedigree.py
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- name : Test with pytest and coverage
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run : |
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pytest -v --cov=sgkit --cov-report=term-missing
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