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timothymillarmergify[bot]
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Remove CI tests of pedigree functions without JIT
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.github/workflows/build-numpy-2.yml

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@@ -27,12 +27,6 @@ jobs:
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pip install -U 'numpy<2.1' -U git+https://github.com/sgkit-dev/bio2zarr.git
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# - name: Run pre-commit
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# uses: pre-commit/[email protected]
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- name: Test with pytest (numba jit disabled)
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env:
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NUMBA_DISABLE_JIT: 1
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run: |
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# avoid guvectorized functions #1194
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pytest -v sgkit/tests/test_pedigree.py
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- name: Test with pytest and coverage
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run: |
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pytest -v --cov=sgkit --cov-report=term-missing

.github/workflows/build.yml

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pip install -r requirements.txt -r requirements-dev.txt
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- name: Run pre-commit
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uses: pre-commit/[email protected]
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- name: Test with pytest (numba jit disabled)
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env:
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NUMBA_DISABLE_JIT: 1
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run: |
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# avoid guvectorized functions #1194
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pytest -v sgkit/tests/test_pedigree.py
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- name: Test with pytest and coverage
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run: |
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pytest -v --cov=sgkit --cov-report=term-missing

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