Add GitHub Actions workflow to run using NumPy 2

Author: tomwhite

.github/workflows/build-numpy-2.yml

@@ -0,0 +1,38 @@
+name: Build NumPy 2
+
+on:
+  push:
+  pull_request:
+
+jobs:
+  build:
+    # Scheduled runs only on the origin org
+    if: (github.event_name == 'schedule' && github.repository_owner == 'sgkit-dev') || (github.event_name != 'schedule')
+    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        python-version: ["3.9", "3.10", "3.11"]
+
+    steps:
+    - uses: actions/checkout@v2
+    - name: Set up Python ${{ matrix.python-version }}
+      uses: actions/setup-python@v2
+      with:
+        python-version: ${{ matrix.python-version }}
+    - name: Install dependencies
+      run: |
+        python -m pip install --upgrade pip
+        pip install -r requirements.txt -r requirements-dev.txt
+        pip install -U numpy
+    - name: Run pre-commit
+      uses: pre-commit/[email protected]
+    - name: Test with pytest (numba jit disabled)
+      env:
+        NUMBA_DISABLE_JIT: 1
+      run: |
+        # avoid guvectorized functions #1194
+        pytest -v sgkit/tests/test_pedigree.py
+        pytest -v sgkit/tests/io/vcf/test_vcf_writer_utils.py
+    - name: Test with pytest and coverage
+      run: |
+        pytest -v --cov=sgkit --cov-report=term-missing