Skip to content

Commit d3a8d0a

Browse files
committed
can this test be run?
1 parent b95d459 commit d3a8d0a

File tree

1 file changed

+4
-4
lines changed

1 file changed

+4
-4
lines changed

sgkit/tests/test_genee.py

Lines changed: 4 additions & 4 deletions
Original file line numberDiff line numberDiff line change
@@ -7,7 +7,7 @@
77
from sgkit.utils import encode_array
88

99

10-
def test_genee(datadir):
10+
def test_genee(datadir="test_genee/"):
1111
# Simulated test data was created using https://github.com/ramachandran-lab/genee
1212
#
1313
# Edit Simulation.R to create a smaller dataset:
@@ -31,8 +31,8 @@ def test_genee(datadir):
3131
# write.csv(result, "/path/to/sgkit/sgkit/tests/test_genee/result.csv")
3232
# write.csv(t(sapply(gene_list, unlist)), "/path/to/sgkit/sgkit/tests/test_genee/gene_list.csv")
3333

34-
mydata = pd.read_csv(datadir / "mydata.csv", index_col=0)
35-
ld = pd.read_csv(datadir / "ld.csv", index_col=0)
34+
mydata = pd.read_csv(datadir + "mydata.csv", index_col=0)
35+
ld = pd.read_csv(datadir + "ld.csv", index_col=0)
3636

3737
# This was extracted from gene_list.csv
3838
gene_list = "1:7,8:14,15:19,20:25,26:35"
@@ -53,7 +53,7 @@ def test_genee(datadir):
5353

5454
df = genee(ds, ld).compute()
5555

56-
expected = pd.read_csv(datadir / "result.csv", index_col=0)
56+
expected = pd.read_csv(datadir + "result.csv", index_col=0)
5757
expected = expected.reset_index()
5858

5959
npt.assert_allclose(df["test_q"], expected["test_q"])

0 commit comments

Comments
 (0)